pkgsrc-wip/plink/Makefile

# $NetBSD$
#
###########################################################
#                  Generated by fbsd2pkg                  #
#              Mon Aug 28 18:05:44 CDT 2017               #
###########################################################

DISTNAME=	plink-${PORTVERSION}
PKGNAME=	plink19-${PORTVERSION}
CATEGORIES=	biology
MASTER_SITES=	${MASTER_SITE_GITHUB:=chrchang/}
GITHUB_PROJECT=	plink-ng
GITHUB_TAG=	cbcf442c176036138419b14d6b46a3d57e8325d4

MAINTAINER=	bacon@NetBSD.org
#HOMEPAGE=	http://pngu.mgh.harvard.edu/~purcell/plink/
COMMENT=	Whole genome association analysis toolset
LICENSE=	gnu-gpl-v2

BUILDLINK_API_DEPENDS.zlib+=    zlib>=1.2.4

# We need Fortran LDFLAGS to link with Lapack.
USE_LANGUAGES=	c c++ fortran
USE_TOOLS+=	gmake

WRKSRC=		${WRKDIR}/plink-ng-${GITHUB_TAG}/1.9

CFLAGS+=	-DDYNAMIC_ZLIB -I${PREFIX}/include -I.
CXXFLAGS+=	-DDYNAMIC_ZLIB -I${PREFIX}/include
MAKE_FLAGS+=	ZLIB=-lz BLASFLAGS="-L${PREFIX}/lib -llapack -lcblas -lblas -lpthread"
INSTALL_TARGET=	install-strip

PORTVERSION=	1.90b4

INSTALLATION_DIRS=	bin

post-patch:
	${CP} ${WRKSRC}/Makefile.std ${WRKSRC}/Makefile

# Override install target and install as plink19 to allow coexistence with
# plink 1.07
do-install:
	${INSTALL_PROGRAM} ${WRKSRC}/plink ${DESTDIR}${PREFIX}/bin/plink19

.include "../../wip/cblas/buildlink3.mk"
.include "../../math/blas/buildlink3.mk"
.include "../../math/lapack/buildlink3.mk"
.include "../../devel/zlib/buildlink3.mk"
.include "../../mk/pthread.buildlink3.mk"
.include "../../mk/bsd.pkg.mk"