Import /home/bacon/Pkgsrc/pkgsrc-2016Q1/wip/bedtools2
bedtools2-2.23.0 as wip/bedtools2.
Collectively, the bedtools utilities are a swiss-army knife of tools
for a wide-range of genomics analysis tasks. The most widely-used
tools enable genome arithmetic: that is, set theory on the genome.
For example, bedtools allows one to intersect, merge, count,
complement, and shuffle genomic intervals from multiple files in
widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
HTTP: https://github.com/arq5x/bedtools2
2016-05-11 19:07:39 +00:00
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# $NetBSD$
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2018-04-26 11:22:47 +00:00
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# N.B. Not sure if we need to override "python" in the Makefiles.
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Import /home/bacon/Pkgsrc/pkgsrc-2016Q1/wip/bedtools2
bedtools2-2.23.0 as wip/bedtools2.
Collectively, the bedtools utilities are a swiss-army knife of tools
for a wide-range of genomics analysis tasks. The most widely-used
tools enable genome arithmetic: that is, set theory on the genome.
For example, bedtools allows one to intersect, merge, count,
complement, and shuffle genomic intervals from multiple files in
widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
HTTP: https://github.com/arq5x/bedtools2
2016-05-11 19:07:39 +00:00
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DISTNAME= bedtools2-${PORTVERSION}
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_GITHUB:=arq5x/}
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GITHUB_TAG= v${PORTVERSION}
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2018-01-02 23:45:38 +00:00
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MAINTAINER= bacon@NetBSD.org
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2018-03-22 23:16:16 +00:00
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HOMEPAGE= https://github.com/arq5x/bedtools2
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Import /home/bacon/Pkgsrc/pkgsrc-2016Q1/wip/bedtools2
bedtools2-2.23.0 as wip/bedtools2.
Collectively, the bedtools utilities are a swiss-army knife of tools
for a wide-range of genomics analysis tasks. The most widely-used
tools enable genome arithmetic: that is, set theory on the genome.
For example, bedtools allows one to intersect, merge, count,
complement, and shuffle genomic intervals from multiple files in
widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
HTTP: https://github.com/arq5x/bedtools2
2016-05-11 19:07:39 +00:00
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COMMENT= Swiss army knife for genome arithmetic
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LICENSE= gnu-gpl-v2
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2016-09-24 18:08:35 +00:00
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USE_LANGUAGES= c c++
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Import /home/bacon/Pkgsrc/pkgsrc-2016Q1/wip/bedtools2
bedtools2-2.23.0 as wip/bedtools2.
Collectively, the bedtools utilities are a swiss-army knife of tools
for a wide-range of genomics analysis tasks. The most widely-used
tools enable genome arithmetic: that is, set theory on the genome.
For example, bedtools allows one to intersect, merge, count,
complement, and shuffle genomic intervals from multiple files in
widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
HTTP: https://github.com/arq5x/bedtools2
2016-05-11 19:07:39 +00:00
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USE_TOOLS+= gmake
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2018-03-22 23:16:16 +00:00
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REPLACE_BASH= scripts/*.sh
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REPLACE_PYTHON= scripts/*.py
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PORTVERSION= 2.27.1
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Import /home/bacon/Pkgsrc/pkgsrc-2016Q1/wip/bedtools2
bedtools2-2.23.0 as wip/bedtools2.
Collectively, the bedtools utilities are a swiss-army knife of tools
for a wide-range of genomics analysis tasks. The most widely-used
tools enable genome arithmetic: that is, set theory on the genome.
For example, bedtools allows one to intersect, merge, count,
complement, and shuffle genomic intervals from multiple files in
widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
HTTP: https://github.com/arq5x/bedtools2
2016-05-11 19:07:39 +00:00
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2018-03-22 23:16:16 +00:00
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.include "../../mk/bsd.prefs.mk"
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Import /home/bacon/Pkgsrc/pkgsrc-2016Q1/wip/bedtools2
bedtools2-2.23.0 as wip/bedtools2.
Collectively, the bedtools utilities are a swiss-army knife of tools
for a wide-range of genomics analysis tasks. The most widely-used
tools enable genome arithmetic: that is, set theory on the genome.
For example, bedtools allows one to intersect, merge, count,
complement, and shuffle genomic intervals from multiple files in
widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
HTTP: https://github.com/arq5x/bedtools2
2016-05-11 19:07:39 +00:00
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2018-03-22 23:16:16 +00:00
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.if ${MACHINE_ARCH} == i386
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MAKE_ENV+= POPCNT_CAPABILITY=0
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.endif
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Import /home/bacon/Pkgsrc/pkgsrc-2016Q1/wip/bedtools2
bedtools2-2.23.0 as wip/bedtools2.
Collectively, the bedtools utilities are a swiss-army knife of tools
for a wide-range of genomics analysis tasks. The most widely-used
tools enable genome arithmetic: that is, set theory on the genome.
For example, bedtools allows one to intersect, merge, count,
complement, and shuffle genomic intervals from multiple files in
widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
HTTP: https://github.com/arq5x/bedtools2
2016-05-11 19:07:39 +00:00
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2018-04-26 11:22:47 +00:00
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pre-configure:
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${SED} -i -e 's|@\$$(CXX)|$(CXX)|g' \
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${WRKSRC}/*/Makefile \
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${WRKSRC}/*/*/Makefile \
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${WRKSRC}/*/*/*/Makefile \
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${WRKSRC}/*/*/*/*/Makefile
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2018-03-22 23:16:16 +00:00
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post-install:
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${STRIP_CMD} ${DESTDIR}${PREFIX}/bin/bedtools
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Import /home/bacon/Pkgsrc/pkgsrc-2016Q1/wip/bedtools2
bedtools2-2.23.0 as wip/bedtools2.
Collectively, the bedtools utilities are a swiss-army knife of tools
for a wide-range of genomics analysis tasks. The most widely-used
tools enable genome arithmetic: that is, set theory on the genome.
For example, bedtools allows one to intersect, merge, count,
complement, and shuffle genomic intervals from multiple files in
widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
HTTP: https://github.com/arq5x/bedtools2
2016-05-11 19:07:39 +00:00
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.include "../../devel/zlib/buildlink3.mk"
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.include "../../lang/python/application.mk"
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.include "../../mk/bsd.pkg.mk"
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