From 411d8f799dbfb7753419864050d809b8597acae7 Mon Sep 17 00:00:00 2001 From: Jason Bacon Date: Fri, 15 Feb 2019 16:23:20 -0600 Subject: [PATCH] ddocent, py-anvio, trinity: Use wip/samtools dep until fixed --- ddocent/Makefile | 2 +- py-anvio/Makefile | 2 +- trinity/Makefile | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/ddocent/Makefile b/ddocent/Makefile index 8e39ebbb02..b6e9210ac0 100644 --- a/ddocent/Makefile +++ b/ddocent/Makefile @@ -27,7 +27,7 @@ DEPENDS= mawk>=0:../../lang/mawk \ parallel>=0:../../parallel/parallel \ bwa>=0.7.13:../../biology/bwa \ cdhit>=0:../../biology/cdhit \ - samtools>=1.3:../../biology/samtools \ + samtools>=1.3:../../wip/samtools \ vcftools>=0.1.15:../../wip/vcftools \ Trimmomatic>=0:../../wip/trimmomatic \ stacks>=0:../../wip/stacks \ diff --git a/py-anvio/Makefile b/py-anvio/Makefile index a694192bee..6ee5cdfae6 100644 --- a/py-anvio/Makefile +++ b/py-anvio/Makefile @@ -23,7 +23,7 @@ HOMEPAGE= http://merenlab.org/software/anvio/ COMMENT= Analysis and visualization platform for 'omics data LICENSE= gnu-gpl-v3 -DEPENDS= samtools>0:../../biology/samtools \ +DEPENDS= samtools>0:../../wip/samtools \ hmmer>0:../../wip/hmmer \ FastTree>0:../../wip/fasttree \ muscle>0:../../wip/muscle \ diff --git a/trinity/Makefile b/trinity/Makefile index 3869b3f283..1b4d9bd9fe 100644 --- a/trinity/Makefile +++ b/trinity/Makefile @@ -23,7 +23,7 @@ DEPENDS+= slclust>=0.0.0.20100202:../../wip/slclust DEPENDS+= salmon>=0.11.3:../../wip/salmon DEPENDS+= bowtie>=1.1.2:../../wip/bowtie DEPENDS+= bowtie2>=2.3.4.2:../../wip/bowtie2 -DEPENDS+= samtools>=1.9:../../biology/samtools +DEPENDS+= samtools>=1.9:../../wip/samtools DEPENDS+= jellyfish>=2.2.10:../../wip/jellyfish2 DEPENDS+= parafly>=2013.01.21:../../wip/parafly DEPENDS+= fastool>=0.1.4:../../wip/fastool