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py-eggnog-mapper: Fast functional annotation of novel DNA or protein sequences

This commit is contained in:
Jason Bacon 2018-11-05 13:13:51 -06:00
parent 2c48e13a26
commit 7af41b43b6
5 changed files with 70 additions and 0 deletions
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1
Makefile
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@ -3233,6 +3233,7 @@ SUBDIR+= py-easymodeler
SUBDIR+= py-ecos
SUBDIR+= py-ecspy
SUBDIR+= py-eemeter
SUBDIR+= py-eggnog-mapper
SUBDIR+= py-eigency
SUBDIR+= py-email-reply-parser
SUBDIR+= py-embedc

7
py-eggnog-mapper/DESCR Normal file
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@ -0,0 +1,7 @@
eggnog-mapper is a tool for fast functional annotation of novel sequences
(genes or proteins) using precomputed eggNOG-based orthology assignments.
Obvious examples include the annotation of novel genomes, transcriptomes or
even metagenomic gene catalogs. The use of orthology predictions for functional
annotation is considered more precise than traditional homology searches, as it
avoids transferring annotations from paralogs (duplicate genes with a higher
chance of being involved in functional divergence).

24
py-eggnog-mapper/Makefile Normal file
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@ -0,0 +1,24 @@
# $NetBSD$
#
###########################################################
# Generated by fbsd2pkg #
# Mon Nov 5 13:03:54 CST 2018 #
###########################################################
DISTNAME= eggnog-mapper-${PV}
PKGNAME= ${PYPKGPREFIX}-eggnog-mapper-${PV}
CATEGORIES= python
MASTER_SITES= ${MASTER_SITE_GITHUB:=jhcepas/}
GITHUB_PROJECT= eggnog-mapper
GITHUB_TAG= ${PV}
MAINTAINER= bacon@NetBSD.org
HOMEPAGE= https://github.com/jhcepas/eggnog-mapper
COMMENT= Fast functional annotation of novel DNA or protein sequences
LICENSE= gnu-gpl-v2
PV= 1.0.3
.include "../../lang/python/egg.mk"
#.include "../../lang/python/application.mk"
.include "../../mk/bsd.pkg.mk"

32
py-eggnog-mapper/PLIST Normal file
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@ -0,0 +1,32 @@
@comment $NetBSD$
${PYSITELIB}/eggnogmapper-1.0-py${PYVERSSUFFIX}.egg-info/PKG-INFO
${PYSITELIB}/eggnogmapper-1.0-py${PYVERSSUFFIX}.egg-info/SOURCES.txt
${PYSITELIB}/eggnogmapper-1.0-py${PYVERSSUFFIX}.egg-info/dependency_links.txt
${PYSITELIB}/eggnogmapper-1.0-py${PYVERSSUFFIX}.egg-info/top_level.txt
${PYSITELIB}/eggnogmapper/__init__.py
${PYSITELIB}/eggnogmapper/__init__.pyc
${PYSITELIB}/eggnogmapper/__init__.pyo
${PYSITELIB}/eggnogmapper/annota.py
${PYSITELIB}/eggnogmapper/annota.pyc
${PYSITELIB}/eggnogmapper/annota.pyo
${PYSITELIB}/eggnogmapper/annota_mongo.py
${PYSITELIB}/eggnogmapper/annota_mongo.pyc
${PYSITELIB}/eggnogmapper/annota_mongo.pyo
${PYSITELIB}/eggnogmapper/common.py
${PYSITELIB}/eggnogmapper/common.pyc
${PYSITELIB}/eggnogmapper/common.pyo
${PYSITELIB}/eggnogmapper/search.py
${PYSITELIB}/eggnogmapper/search.pyc
${PYSITELIB}/eggnogmapper/search.pyo
${PYSITELIB}/eggnogmapper/seqio.py
${PYSITELIB}/eggnogmapper/seqio.pyc
${PYSITELIB}/eggnogmapper/seqio.pyo
${PYSITELIB}/eggnogmapper/server.py
${PYSITELIB}/eggnogmapper/server.pyc
${PYSITELIB}/eggnogmapper/server.pyo
${PYSITELIB}/eggnogmapper/utils.py
${PYSITELIB}/eggnogmapper/utils.pyc
${PYSITELIB}/eggnogmapper/utils.pyo
${PYSITELIB}/eggnogmapper/version.py
${PYSITELIB}/eggnogmapper/version.pyc
${PYSITELIB}/eggnogmapper/version.pyo

6
py-eggnog-mapper/distinfo Normal file
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@ -0,0 +1,6 @@
$NetBSD$
SHA1 (eggnog-mapper-1.0.3.tar.gz) = 8018f0f2556c31b9b7b5d99dcaffe55518c4becc
RMD160 (eggnog-mapper-1.0.3.tar.gz) = 819cc711a801c234694aedddf1e3475b9919440c
SHA512 (eggnog-mapper-1.0.3.tar.gz) = 4d53f8455dc4edf4587a75359cc9b884758f2541c9d9a02994fa009b43aecb6e8ed8dafb4b02906709b6c1c6d8fb0e059000cba59cad70d01d482fb5b4fbb8bf
Size (eggnog-mapper-1.0.3.tar.gz) = 37713129 bytes