py-dnaio: Read and write FASTQ and FASTA

This commit is contained in:
Jason Bacon 2019-10-10 15:18:54 -05:00
parent 0ce86ca0f7
commit af13c2158a
4 changed files with 70 additions and 0 deletions

3
py-dnaio/DESCR Normal file
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dnaio is a Python 3 library for fast parsing of FASTQ and also FASTA files. The
code was previously part of the cutadapt tool and has been improved since it
has been split out.

33
py-dnaio/Makefile Normal file
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# $NetBSD$
#
###########################################################
# Generated by fbsd2pkg #
# Thu Oct 10 15:09:51 CDT 2019 #
###########################################################
DISTNAME= dnaio-${PV}
PKGNAME= ${PYPKGPREFIX}-dnaio-${PV}
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_PYPI:=d/dnaio/}
MAINTAINER= bacon@NetBSD.org
HOMEPAGE= https://pypi.python.org/pypi/dnaio
COMMENT= Read and write FASTQ and FASTA
# Check this
LICENSE= mit
# Test and change if necessary.
# MAKE_JOBS_SAFE= no
# Just assuming C and C++: Adjust this!
USE_LANGUAGES= c
PV= 0.4
# Verify that we shouldn't use distutils.mk or extensions.mk instead.
.include "../../lang/python/egg.mk"
# Based on USES=python. Check this.
.include "../../lang/python/application.mk"
# CentOS doesn't have zlib in the base, so uncomment if needed.
# .include "../../devel/zlib/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"

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py-dnaio/PLIST Normal file
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@comment $NetBSD$
${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
${PYSITELIB}/${EGG_INFODIR}/requires.txt
${PYSITELIB}/${EGG_INFODIR}/top_level.txt
${PYSITELIB}/dnaio/__init__.py
${PYSITELIB}/dnaio/__init__.pyo
${PYSITELIB}/dnaio/__init__.pyc
${PYSITELIB}/dnaio/_util.pyo
${PYSITELIB}/dnaio/_util.pyc
${PYSITELIB}/dnaio/_version.pyo
${PYSITELIB}/dnaio/_version.pyc
${PYSITELIB}/dnaio/chunks.pyo
${PYSITELIB}/dnaio/chunks.pyc
${PYSITELIB}/dnaio/exceptions.pyo
${PYSITELIB}/dnaio/exceptions.pyc
${PYSITELIB}/dnaio/readers.pyo
${PYSITELIB}/dnaio/readers.pyc
${PYSITELIB}/dnaio/writers.pyo
${PYSITELIB}/dnaio/writers.pyc
${PYSITELIB}/dnaio/_core.so
${PYSITELIB}/dnaio/_util.py
${PYSITELIB}/dnaio/_version.py
${PYSITELIB}/dnaio/chunks.py
${PYSITELIB}/dnaio/exceptions.py
${PYSITELIB}/dnaio/readers.py
${PYSITELIB}/dnaio/writers.py

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py-dnaio/distinfo Normal file
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$NetBSD$
SHA1 (dnaio-0.4.tar.gz) = f4073d7a3f032dbfaaf3bb05d94a68c2a6886118
RMD160 (dnaio-0.4.tar.gz) = 5ae69f8146d86595a09714affe4d8d8cc75614a5
SHA512 (dnaio-0.4.tar.gz) = e6491ceab5c810cfb06f807ac24cfe95f963323002344d37a17f6c60669139469c7a6ca4ddaf19dc37c3a20c7eea9bcd80c2fcfb6378ee4f1acd5540b032b084
Size (dnaio-0.4.tar.gz) = 123137 bytes