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mcl: Upgrade to 14-137 and clean up

This commit is contained in:
Jason Bacon 2018-11-02 14:04:05 -05:00
parent f203fb3d5b
commit e9fbd831bf
4 changed files with 35 additions and 19 deletions
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10
mcl/DESCR
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@ -1,7 +1,3 @@
The MCL package is an implementation of the MCL algorithm, and offers
utilities for manipulating sparse matrices (the essential data structure in the
MCL algorithm) and conducting cluster experiments.
MCL is currently being used in sciences like biology (protein family detection,
genomics), computer science (node clustering in Peer-to-Peer networks),
and linguistics (text analysis)
The MCL algorithm is short for the Markov Cluster Algorithm, a fast and
scalable unsupervised cluster algorithm for graphs (also known as networks)
based on simulation of (stochastic) flow in graphs.

25
mcl/Makefile
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@ -1,15 +1,26 @@
# $NetBSD: Makefile,v 1.1 2013/09/01 20:46:00 jihbed Exp $
# $NetBSD$
#
###########################################################
# Generated by fbsd2pkg #
# Fri Nov 2 13:57:58 CDT 2018 #
###########################################################
DISTNAME= mcl-12-135
DISTNAME= mcl-${PV}-137
PKGNAME= mcl-${PV}
CATEGORIES= math
MASTER_SITES= http://micans.org/mcl/src/
MASTER_SITES= https://www.micans.org/mcl/src/
MAINTAINER= jihbed.research@gmail.com
HOMEPAGE= http://micans.org/mcl/src/
COMMENT= Markov Cluster algorithm
MAINTAINER= bacon@NetBSD.org
HOMEPAGE= https://www.micans.org/mcl/index.html?sec_software
COMMENT= Fast and scalable unsupervised cluster algorithm for graphs
LICENSE= gnu-gpl-v3
GNU_CONFIGURE= yes
USE_TOOLS= bash perl:run
REPLACE_BASH= scripts/clxdo
REPLACE_PERL= src/shcl/mclpipeline
PV= 14
.include "../../mk/pthread.buildlink3.mk"
.include "../../mk/bsd.pkg.mk"

10
mcl/PLIST
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@ -1,6 +1,7 @@
@comment $NetBSD: PLIST,v 1.1 2013/09/01 20:46:00 jihbed Exp $
@comment $NetBSD$
bin/clm
bin/clmformat
bin/clxdo
bin/mcl
bin/mclcm
bin/mclpipeline
@ -19,8 +20,10 @@ man/man1/clmdist.1
man/man1/clmformat.1
man/man1/clmimac.1
man/man1/clminfo.1
man/man1/clminfo2.1
man/man1/clmmate.1
man/man1/clmmeet.1
man/man1/clmoptics.1
man/man1/clmorder.1
man/man1/clmresidue.1
man/man1/clmvol.1
@ -62,10 +65,14 @@ share/doc/mcl/clmimac.html
share/doc/mcl/clmimac.ps
share/doc/mcl/clminfo.html
share/doc/mcl/clminfo.ps
share/doc/mcl/clminfo2.html
share/doc/mcl/clminfo2.ps
share/doc/mcl/clmmate.html
share/doc/mcl/clmmate.ps
share/doc/mcl/clmmeet.html
share/doc/mcl/clmmeet.ps
share/doc/mcl/clmoptics.html
share/doc/mcl/clmoptics.ps
share/doc/mcl/clmorder.html
share/doc/mcl/clmorder.ps
share/doc/mcl/clmprotocols.html
@ -100,6 +107,7 @@ share/doc/mcl/examples/friends
share/doc/mcl/examples/fznyy.mci
share/doc/mcl/examples/fznyy.tab
share/doc/mcl/examples/honey.mci
share/doc/mcl/examples/infinity.mci
share/doc/mcl/examples/lattice.mci
share/doc/mcl/examples/make-falkner.pl
share/doc/mcl/examples/matula.mci

9
mcl/distinfo
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@ -1,5 +1,6 @@
$NetBSD: distinfo,v 1.1 2013/09/01 20:46:00 jihbed Exp $
$NetBSD$
SHA1 (mcl-12-135.tar.gz) = 27e7bc08fe5f0d3361bbc98d343c9d045712e406
RMD160 (mcl-12-135.tar.gz) = a3a3f6a9f19d65b0520c29a2116687a92fca6ca2
Size (mcl-12-135.tar.gz) = 2970824 bytes
SHA1 (mcl-14-137.tar.gz) = 9016240ecdc39d26e493c1e18967e46ff0742bdd
RMD160 (mcl-14-137.tar.gz) = 063e6415a0d23dcdb2fa8663fe62a95ec4f67f5d
SHA512 (mcl-14-137.tar.gz) = 7e399e571de60da5e1ba9e643b7f0cd98fe484cc8cef517222a57322b5c7a04afa675c7cf0ab88b5801efa9565e5e67a14c4914987964308391d88dd4be1bea2
Size (mcl-14-137.tar.gz) = 3035491 bytes