ddocent: Clean up, change wip deps to committed categories

This commit is contained in:
Jason Bacon 2019-05-04 11:33:23 -05:00
parent 8384e48368
commit faa64e7463
1 changed files with 17 additions and 17 deletions

View File

@ -20,23 +20,23 @@ LICENSE= mit
# New ddocent works with 2.23.0 or >= 2.26.0
# Do we really need trimadap? It used to be part of seqtk.
# ddocent test data do not unpack with FreeBSD 11.1 /usr/bin/unzip
DEPENDS= mawk>=0:../../lang/mawk \
gawk>=0:../../lang/gawk \
coreutils>=0:../../sysutils/coreutils \
gnuplot>=0:../../graphics/gnuplot \
parallel>=0:../../parallel/parallel \
bwa>=0.7.13:../../biology/bwa \
cdhit>=0:../../biology/cdhit \
samtools>=1.3:../../biology/samtools \
vcftools>=0.1.15:../../wip/vcftools \
Trimmomatic>=0:../../biology/trimmomatic \
stacks>=0:../../biology/stacks \
rainbow>=0:../../wip/rainbow \
trimadap>=0:../../wip/trimadap \
seqtk>=0:../../wip/seqtk \
bedtools2>=2.26.0:../../wip/bedtools2 \
pear-merger>=0:../../wip/pear-merger \
freebayes>=0:../../wip/freebayes
DEPENDS= mawk>=0:../../lang/mawk
DEPENDS+= gawk>=0:../../lang/gawk
DEPENDS+= coreutils>=0:../../sysutils/coreutils
DEPENDS+= gnuplot>=0:../../graphics/gnuplot
DEPENDS+= parallel>=0:../../parallel/parallel
DEPENDS+= bwa>=0.7.13:../../biology/bwa
DEPENDS+= cdhit>=0:../../biology/cdhit
DEPENDS+= samtools>=1.3:../../biology/samtools
DEPENDS+= vcftools>=0.1.15:../../wip/vcftools
DEPENDS+= Trimmomatic>=0:../../biology/trimmomatic
DEPENDS+= stacks>=0:../../biology/stacks
DEPENDS+= rainbow>=0:../../wip/rainbow
DEPENDS+= trimadap>=0:../../wip/trimadap
DEPENDS+= seqtk>=0:../../wip/seqtk
DEPENDS+= bedtools2>=2.26.0:../../wip/bedtools2
DEPENDS+= pear-merger>=0:../../wip/pear-merger
DEPENDS+= freebayes>=0:../../wip/freebayes
## These follow patch-dDocent, so don't apply them within the source tree,
## or they'll get picked up by patch generators and hard-code PREFIX