From faa64e7463a86eefdc5c09e5721931348178f111 Mon Sep 17 00:00:00 2001 From: Jason Bacon Date: Sat, 4 May 2019 11:33:23 -0500 Subject: [PATCH] ddocent: Clean up, change wip deps to committed categories --- ddocent/Makefile | 34 +++++++++++++++++----------------- 1 file changed, 17 insertions(+), 17 deletions(-) diff --git a/ddocent/Makefile b/ddocent/Makefile index 33fcefb6dc..aeb575c83e 100644 --- a/ddocent/Makefile +++ b/ddocent/Makefile @@ -20,23 +20,23 @@ LICENSE= mit # New ddocent works with 2.23.0 or >= 2.26.0 # Do we really need trimadap? It used to be part of seqtk. # ddocent test data do not unpack with FreeBSD 11.1 /usr/bin/unzip -DEPENDS= mawk>=0:../../lang/mawk \ - gawk>=0:../../lang/gawk \ - coreutils>=0:../../sysutils/coreutils \ - gnuplot>=0:../../graphics/gnuplot \ - parallel>=0:../../parallel/parallel \ - bwa>=0.7.13:../../biology/bwa \ - cdhit>=0:../../biology/cdhit \ - samtools>=1.3:../../biology/samtools \ - vcftools>=0.1.15:../../wip/vcftools \ - Trimmomatic>=0:../../biology/trimmomatic \ - stacks>=0:../../biology/stacks \ - rainbow>=0:../../wip/rainbow \ - trimadap>=0:../../wip/trimadap \ - seqtk>=0:../../wip/seqtk \ - bedtools2>=2.26.0:../../wip/bedtools2 \ - pear-merger>=0:../../wip/pear-merger \ - freebayes>=0:../../wip/freebayes +DEPENDS= mawk>=0:../../lang/mawk +DEPENDS+= gawk>=0:../../lang/gawk +DEPENDS+= coreutils>=0:../../sysutils/coreutils +DEPENDS+= gnuplot>=0:../../graphics/gnuplot +DEPENDS+= parallel>=0:../../parallel/parallel +DEPENDS+= bwa>=0.7.13:../../biology/bwa +DEPENDS+= cdhit>=0:../../biology/cdhit +DEPENDS+= samtools>=1.3:../../biology/samtools +DEPENDS+= vcftools>=0.1.15:../../wip/vcftools +DEPENDS+= Trimmomatic>=0:../../biology/trimmomatic +DEPENDS+= stacks>=0:../../biology/stacks +DEPENDS+= rainbow>=0:../../wip/rainbow +DEPENDS+= trimadap>=0:../../wip/trimadap +DEPENDS+= seqtk>=0:../../wip/seqtk +DEPENDS+= bedtools2>=2.26.0:../../wip/bedtools2 +DEPENDS+= pear-merger>=0:../../wip/pear-merger +DEPENDS+= freebayes>=0:../../wip/freebayes ## These follow patch-dDocent, so don't apply them within the source tree, ## or they'll get picked up by patch generators and hard-code PREFIX