69 lines
1.8 KiB
Plaintext
69 lines
1.8 KiB
Plaintext
$NetBSD$
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# Respect pkgsrc env
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--- Makefile.orig 2019-12-19 09:57:32.000000000 +0000
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+++ Makefile
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@@ -22,12 +22,12 @@
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# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
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# DEALINGS IN THE SOFTWARE.
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-CC = gcc
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-AR = ar
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-RANLIB = ranlib
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-CPPFLAGS =
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-CFLAGS = -g -Wall -O2
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-LDFLAGS =
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+CC ?= gcc
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+AR ?= ar
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+RANLIB ?= ranlib
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+# CPPFLAGS =
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+CFLAGS ?= -g -Wall -O2
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+# LDFLAGS =
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LIBS =
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DYNAMIC_FLAGS = -rdynamic
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@@ -45,12 +45,12 @@ OBJS = main.o vcfindex.o tabix.o \
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ccall.o em.o prob1.o kmin.o # the original samtools calling
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PLUGIN_OBJS = vcfplugin.o
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-prefix = /usr/local
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-exec_prefix = $(prefix)
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+PREFIX ?= /usr/local
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+exec_prefix = $(PREFIX)
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bindir = $(exec_prefix)/bin
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libdir = $(exec_prefix)/lib
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libexecdir = $(exec_prefix)/libexec
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-mandir = $(prefix)/share/man
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+mandir = $(PREFIX)/share/man
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man1dir = $(mandir)/man1
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# Installation location for $(PLUGINS)
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plugindir = $(libexecdir)/bcftools
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@@ -59,12 +59,11 @@ pluginpath = $(plugindir)
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misc_bindir = $(bindir)
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MKDIR_P = mkdir -p
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-INSTALL = install -p
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-INSTALL_DATA = $(INSTALL) -m 644
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-INSTALL_DIR = $(MKDIR_P) -m 755
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-INSTALL_MAN = $(INSTALL_DATA)
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-INSTALL_PROGRAM = $(INSTALL)
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-INSTALL_SCRIPT = $(INSTALL_PROGRAM)
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+INSTALL_DATA = ${BSD_INSTALL_DATA}
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+INSTALL_DIR = $(MKDIR_P)
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+INSTALL_MAN = ${BSD_INSTALL_MAN}
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+INSTALL_PROGRAM = ${BSD_INSTALL_PROGRAM}
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+INSTALL_SCRIPT = ${BSD_INSTALL_SCRIPT}
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PROGRAMS = bcftools
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MISC_SCRIPTS = \
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@@ -78,7 +77,7 @@ TEST_PROGRAMS = test/test-rbuf test/test
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ALL_CPPFLAGS = -I. $(HTSLIB_CPPFLAGS) $(CPPFLAGS)
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ALL_LDFLAGS = $(HTSLIB_LDFLAGS) $(LDFLAGS)
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-ALL_LIBS = -lz $(DL_LIBS) $(LIBS)
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+ALL_LIBS = -lz $(LIBS)
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all: $(PROGRAMS) $(TEST_PROGRAMS) plugins
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