pkgsrc-wip/blasr_libcpp/PLIST

@comment $NetBSD: PLIST,v 1.2 2015/09/11 16:48:33 outpaddling Exp $
include/blasr_libcpp/alignment/MappingMetrics.hpp
include/blasr_libcpp/alignment/algorithms/alignment/AffineGuidedAlign.hpp
include/blasr_libcpp/alignment/algorithms/alignment/AffineKBandAlign.hpp
include/blasr_libcpp/alignment/algorithms/alignment/AlignmentFormats.hpp
include/blasr_libcpp/alignment/algorithms/alignment/AlignmentUtils.hpp
include/blasr_libcpp/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp
include/blasr_libcpp/alignment/algorithms/alignment/BaseScoreFunction.hpp
include/blasr_libcpp/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp
include/blasr_libcpp/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp
include/blasr_libcpp/alignment/algorithms/alignment/ExtendAlign.hpp
include/blasr_libcpp/alignment/algorithms/alignment/FullQVAlign.hpp
include/blasr_libcpp/alignment/algorithms/alignment/GraphPaper.hpp
include/blasr_libcpp/alignment/algorithms/alignment/GraphPaperImpl.hpp
include/blasr_libcpp/alignment/algorithms/alignment/GuidedAlign.hpp
include/blasr_libcpp/alignment/algorithms/alignment/IDSScoreFunction.hpp
include/blasr_libcpp/alignment/algorithms/alignment/KBandAlign.hpp
include/blasr_libcpp/alignment/algorithms/alignment/OneGapAlignment.hpp
include/blasr_libcpp/alignment/algorithms/alignment/QualityValueScoreFunction.hpp
include/blasr_libcpp/alignment/algorithms/alignment/SDPAlign.hpp
include/blasr_libcpp/alignment/algorithms/alignment/SDPAlignImpl.hpp
include/blasr_libcpp/alignment/algorithms/alignment/SWAlign.hpp
include/blasr_libcpp/alignment/algorithms/alignment/SWAlignImpl.hpp
include/blasr_libcpp/alignment/algorithms/alignment/ScoreMatrices.hpp
include/blasr_libcpp/alignment/algorithms/alignment/StringToScoreMatrix.hpp
include/blasr_libcpp/alignment/algorithms/alignment/sdp/FragmentSort.hpp
include/blasr_libcpp/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp
include/blasr_libcpp/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h
include/blasr_libcpp/alignment/algorithms/alignment/sdp/SDPColumn.hpp
include/blasr_libcpp/alignment/algorithms/alignment/sdp/SDPFragment.hpp
include/blasr_libcpp/alignment/algorithms/alignment/sdp/SDPSet.hpp
include/blasr_libcpp/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp
include/blasr_libcpp/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp
include/blasr_libcpp/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp
include/blasr_libcpp/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h
include/blasr_libcpp/alignment/algorithms/anchoring/BWTSearch.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/BWTSearchImpl.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/BasicEndpoint.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/BasicEndpointImpl.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/ClusterProbability.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/Coordinate.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/FindMaxInterval.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/GlobalChain.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/GlobalChainImpl.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/LISPValue.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/LISPValueImpl.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/LISPValueWeightor.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/LISQValueWeightor.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/LISSizeWeightor.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/MapBySuffixArray.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/PrioritySearchTree.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/ScoreAnchors.hpp
include/blasr_libcpp/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp
include/blasr_libcpp/alignment/algorithms/compare/CompareStrings.hpp
include/blasr_libcpp/alignment/algorithms/sorting/DifferenceCovers.hpp
include/blasr_libcpp/alignment/algorithms/sorting/Karkkainen.hpp
include/blasr_libcpp/alignment/algorithms/sorting/LightweightSuffixArray.hpp
include/blasr_libcpp/alignment/algorithms/sorting/MultikeyQuicksort.hpp
include/blasr_libcpp/alignment/algorithms/sorting/qsufsort.hpp
include/blasr_libcpp/alignment/anchoring/AnchorParameters.hpp
include/blasr_libcpp/alignment/bwt/BWT.hpp
include/blasr_libcpp/alignment/bwt/Occ.hpp
include/blasr_libcpp/alignment/bwt/PackedHash.hpp
include/blasr_libcpp/alignment/bwt/Pos.hpp
include/blasr_libcpp/alignment/datastructures/alignment/AlignedPair.h
include/blasr_libcpp/alignment/datastructures/alignment/Alignment.hpp
include/blasr_libcpp/alignment/datastructures/alignment/AlignmentCandidate.hpp
include/blasr_libcpp/alignment/datastructures/alignment/AlignmentContext.hpp
include/blasr_libcpp/alignment/datastructures/alignment/AlignmentGapList.h
include/blasr_libcpp/alignment/datastructures/alignment/AlignmentMap.hpp
include/blasr_libcpp/alignment/datastructures/alignment/AlignmentStats.hpp
include/blasr_libcpp/alignment/datastructures/alignment/ByteAlignment.h
include/blasr_libcpp/alignment/datastructures/alignment/CmpFile.hpp
include/blasr_libcpp/alignment/datastructures/alignment/CmpIndexedStringTable.h
include/blasr_libcpp/alignment/datastructures/alignment/CmpReadGroupTable.h
include/blasr_libcpp/alignment/datastructures/alignment/CmpRefSeqTable.h
include/blasr_libcpp/alignment/datastructures/alignment/FilterCriteria.hpp
include/blasr_libcpp/alignment/datastructures/alignment/Path.h
include/blasr_libcpp/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp
include/blasr_libcpp/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp
include/blasr_libcpp/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp
include/blasr_libcpp/alignment/datastructures/alignmentset/SAMQVConversion.hpp
include/blasr_libcpp/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp
include/blasr_libcpp/alignment/datastructures/anchoring/AnchorParameters.hpp
include/blasr_libcpp/alignment/datastructures/anchoring/ClusterList.hpp
include/blasr_libcpp/alignment/datastructures/anchoring/MatchPos.hpp
include/blasr_libcpp/alignment/datastructures/anchoring/WeightedInterval.hpp
include/blasr_libcpp/alignment/files/BaseSequenceIO.hpp
include/blasr_libcpp/alignment/files/CCSIterator.hpp
include/blasr_libcpp/alignment/files/FragmentCCSIterator.hpp
include/blasr_libcpp/alignment/files/ReaderAgglomerate.hpp
include/blasr_libcpp/alignment/files/ReaderAgglomerateImpl.hpp
include/blasr_libcpp/alignment/format/BAMPrinter.hpp
include/blasr_libcpp/alignment/format/BAMPrinterImpl.hpp
include/blasr_libcpp/alignment/format/CompareSequencesPrinter.hpp
include/blasr_libcpp/alignment/format/CompareSequencesPrinterImpl.hpp
include/blasr_libcpp/alignment/format/IntervalPrinter.hpp
include/blasr_libcpp/alignment/format/SAMHeaderPrinter.hpp
include/blasr_libcpp/alignment/format/SAMPrinter.hpp
include/blasr_libcpp/alignment/format/SAMPrinterImpl.hpp
include/blasr_libcpp/alignment/format/StickAlignmentPrinter.hpp
include/blasr_libcpp/alignment/format/SummaryPrinter.hpp
include/blasr_libcpp/alignment/format/VulgarPrinter.hpp
include/blasr_libcpp/alignment/format/XMLPrinter.hpp
include/blasr_libcpp/alignment/ipc/SharedMemoryAllocator.hpp
include/blasr_libcpp/alignment/qvs/QualityValueProfile.hpp
include/blasr_libcpp/alignment/simulator/CDFMap.hpp
include/blasr_libcpp/alignment/simulator/ContextOutputList.hpp
include/blasr_libcpp/alignment/simulator/ContextSample.hpp
include/blasr_libcpp/alignment/simulator/ContextSet.hpp
include/blasr_libcpp/alignment/simulator/LengthHistogram.hpp
include/blasr_libcpp/alignment/simulator/OutputList.hpp
include/blasr_libcpp/alignment/simulator/OutputSample.hpp
include/blasr_libcpp/alignment/simulator/OutputSampleList.hpp
include/blasr_libcpp/alignment/simulator/OutputSampleListSet.hpp
include/blasr_libcpp/alignment/simulator/QualitySample.hpp
include/blasr_libcpp/alignment/statistics/AnchorDistributionTable.hpp
include/blasr_libcpp/alignment/statistics/LookupAnchorDistribution.hpp
include/blasr_libcpp/alignment/statistics/StatUtils.hpp
include/blasr_libcpp/alignment/statistics/StatUtilsImpl.hpp
include/blasr_libcpp/alignment/statistics/VarianceAccumulator.hpp
include/blasr_libcpp/alignment/statistics/VarianceAccumulatorImpl.hpp
include/blasr_libcpp/alignment/statistics/cdfs.hpp
include/blasr_libcpp/alignment/statistics/pdfs.hpp
include/blasr_libcpp/alignment/suffixarray/LCPTable.hpp
include/blasr_libcpp/alignment/suffixarray/SharedSuffixArray.hpp
include/blasr_libcpp/alignment/suffixarray/SuffixArray.hpp
include/blasr_libcpp/alignment/suffixarray/SuffixArrayTypes.hpp
include/blasr_libcpp/alignment/suffixarray/ssort.hpp
include/blasr_libcpp/alignment/tuples/BaseTuple.hpp
include/blasr_libcpp/alignment/tuples/CompressedDNATuple.hpp
include/blasr_libcpp/alignment/tuples/CountedTuple.h
include/blasr_libcpp/alignment/tuples/DNATuple.hpp
include/blasr_libcpp/alignment/tuples/DNATupleImpl.hpp
include/blasr_libcpp/alignment/tuples/DNATupleList.h
include/blasr_libcpp/alignment/tuples/HashedTupleList.hpp
include/blasr_libcpp/alignment/tuples/HashedTupleListImpl.hpp
include/blasr_libcpp/alignment/tuples/TupleCountTable.hpp
include/blasr_libcpp/alignment/tuples/TupleCountTableImpl.hpp
include/blasr_libcpp/alignment/tuples/TupleList.hpp
include/blasr_libcpp/alignment/tuples/TupleListImpl.hpp
include/blasr_libcpp/alignment/tuples/TupleMask.h
include/blasr_libcpp/alignment/tuples/TupleMatching.hpp
include/blasr_libcpp/alignment/tuples/TupleMatchingImpl.hpp
include/blasr_libcpp/alignment/tuples/TupleMetrics.hpp
include/blasr_libcpp/alignment/tuples/TupleOperations.h
include/blasr_libcpp/alignment/tuples/TupleTranslations.h
include/blasr_libcpp/alignment/tuples/tuple.h
include/blasr_libcpp/alignment/utils/FileOfFileNames.hpp
include/blasr_libcpp/alignment/utils/FileUtils.hpp
include/blasr_libcpp/alignment/utils/LogUtils.hpp
include/blasr_libcpp/alignment/utils/PhredUtils.hpp
include/blasr_libcpp/alignment/utils/RangeUtils.hpp
include/blasr_libcpp/alignment/utils/RegionUtils.hpp
include/blasr_libcpp/alignment/utils/RegionUtilsImpl.hpp
include/blasr_libcpp/alignment/utils/SimpleXMLUtils.hpp
include/blasr_libcpp/alignment/utils/TimeUtils.hpp
include/blasr_libcpp/hdf/BufferedHDF2DArray.hpp
include/blasr_libcpp/hdf/BufferedHDF2DArrayImpl.hpp
include/blasr_libcpp/hdf/BufferedHDFArray.hpp
include/blasr_libcpp/hdf/BufferedHDFArrayImpl.hpp
include/blasr_libcpp/hdf/DatasetCollection.hpp
include/blasr_libcpp/hdf/DatasetCollectionImpl.hpp
include/blasr_libcpp/hdf/HDF2DArray.hpp
include/blasr_libcpp/hdf/HDFAlnGroup.hpp
include/blasr_libcpp/hdf/HDFAlnGroupGroup.hpp
include/blasr_libcpp/hdf/HDFAlnInfoGroup.hpp
include/blasr_libcpp/hdf/HDFArray.hpp
include/blasr_libcpp/hdf/HDFAtom.hpp
include/blasr_libcpp/hdf/HDFAttributable.hpp
include/blasr_libcpp/hdf/HDFBasReader.hpp
include/blasr_libcpp/hdf/HDFBasWriter.hpp
include/blasr_libcpp/hdf/HDFCCSReader.hpp
include/blasr_libcpp/hdf/HDFCmpData.hpp
include/blasr_libcpp/hdf/HDFCmpExperimentGroup.hpp
include/blasr_libcpp/hdf/HDFCmpFile.hpp
include/blasr_libcpp/hdf/HDFCmpReader.hpp
include/blasr_libcpp/hdf/HDFCmpRefAlignmentGroup.hpp
include/blasr_libcpp/hdf/HDFCmpRootGroup.hpp
include/blasr_libcpp/hdf/HDFCmpSupportedFields.hpp
include/blasr_libcpp/hdf/HDFCommonFG.hpp
include/blasr_libcpp/hdf/HDFConfig.hpp
include/blasr_libcpp/hdf/HDFData.hpp
include/blasr_libcpp/hdf/HDFFile.hpp
include/blasr_libcpp/hdf/HDFFileLogGroup.hpp
include/blasr_libcpp/hdf/HDFGroup.hpp
include/blasr_libcpp/hdf/HDFMovieInfoGroup.hpp
include/blasr_libcpp/hdf/HDFNewBasReader.hpp
include/blasr_libcpp/hdf/HDFPlsReader.hpp
include/blasr_libcpp/hdf/HDFPlsWriter.hpp
include/blasr_libcpp/hdf/HDFPulseDataFile.hpp
include/blasr_libcpp/hdf/HDFRefGroupGroup.hpp
include/blasr_libcpp/hdf/HDFRefInfoGroup.hpp
include/blasr_libcpp/hdf/HDFRegionTableReader.hpp
include/blasr_libcpp/hdf/HDFRegionTableWriter.hpp
include/blasr_libcpp/hdf/HDFSMRTSequenceReader.hpp
include/blasr_libcpp/hdf/HDFScanDataReader.hpp
include/blasr_libcpp/hdf/HDFScanDataWriter.hpp
include/blasr_libcpp/hdf/HDFSentinalFile.hpp
include/blasr_libcpp/hdf/HDFUtils.hpp
include/blasr_libcpp/hdf/HDFWriteBuffer.hpp
include/blasr_libcpp/hdf/HDFZMWReader.hpp
include/blasr_libcpp/libconfig.h
include/blasr_libcpp/pbdata/CCSSequence.hpp
include/blasr_libcpp/pbdata/ChangeListID.hpp
include/blasr_libcpp/pbdata/CommandLineParser.hpp
include/blasr_libcpp/pbdata/Compare4BitCompressed.hpp
include/blasr_libcpp/pbdata/CompressedDNASequence.hpp
include/blasr_libcpp/pbdata/CompressedSequence.hpp
include/blasr_libcpp/pbdata/CompressedSequenceImpl.hpp
include/blasr_libcpp/pbdata/DNASequence.hpp
include/blasr_libcpp/pbdata/Enumerations.h
include/blasr_libcpp/pbdata/FASTAReader.hpp
include/blasr_libcpp/pbdata/FASTASequence.hpp
include/blasr_libcpp/pbdata/FASTQReader.hpp
include/blasr_libcpp/pbdata/FASTQSequence.hpp
include/blasr_libcpp/pbdata/GFFFile.hpp
include/blasr_libcpp/pbdata/MD5Utils.hpp
include/blasr_libcpp/pbdata/MD5UtilsImpl.hpp
include/blasr_libcpp/pbdata/NucConversion.hpp
include/blasr_libcpp/pbdata/PackedDNASequence.hpp
include/blasr_libcpp/pbdata/ReverseCompressIndex.hpp
include/blasr_libcpp/pbdata/SMRTSequence.hpp
include/blasr_libcpp/pbdata/SeqUtils.hpp
include/blasr_libcpp/pbdata/SeqUtilsImpl.hpp
include/blasr_libcpp/pbdata/StringUtils.hpp
include/blasr_libcpp/pbdata/Types.h
include/blasr_libcpp/pbdata/VectorUtils.hpp
include/blasr_libcpp/pbdata/alignment/CmpAlignment.hpp
include/blasr_libcpp/pbdata/alignment/CmpAlignmentImpl.hpp
include/blasr_libcpp/pbdata/amos/AfgBasWriter.hpp
include/blasr_libcpp/pbdata/defs.h
include/blasr_libcpp/pbdata/loadpulses/MetricField.hpp
include/blasr_libcpp/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp
include/blasr_libcpp/pbdata/matrix/FlatMatrix.hpp
include/blasr_libcpp/pbdata/matrix/FlatMatrixImpl.hpp
include/blasr_libcpp/pbdata/matrix/Matrix.hpp
include/blasr_libcpp/pbdata/matrix/MatrixImpl.hpp
include/blasr_libcpp/pbdata/metagenome/FindRandomSequence.hpp
include/blasr_libcpp/pbdata/metagenome/SequenceIndexDatabase.hpp
include/blasr_libcpp/pbdata/metagenome/SequenceIndexDatabaseImpl.hpp
include/blasr_libcpp/pbdata/metagenome/TitleTable.hpp
include/blasr_libcpp/pbdata/qvs/QualityTransform.hpp
include/blasr_libcpp/pbdata/qvs/QualityValue.hpp
include/blasr_libcpp/pbdata/qvs/QualityValueVector.hpp
include/blasr_libcpp/pbdata/qvs/QualityValueVectorImpl.hpp
include/blasr_libcpp/pbdata/reads/BaseFile.hpp
include/blasr_libcpp/pbdata/reads/BaseFileImpl.hpp
include/blasr_libcpp/pbdata/reads/HoleXY.hpp
include/blasr_libcpp/pbdata/reads/PulseBaseCommon.hpp
include/blasr_libcpp/pbdata/reads/PulseFile.hpp
include/blasr_libcpp/pbdata/reads/PulseFileImpl.hpp
include/blasr_libcpp/pbdata/reads/ReadInterval.hpp
include/blasr_libcpp/pbdata/reads/ReadType.hpp
include/blasr_libcpp/pbdata/reads/RegionTable.hpp
include/blasr_libcpp/pbdata/reads/ScanData.hpp
include/blasr_libcpp/pbdata/reads/ZMWGroupEntry.hpp
include/blasr_libcpp/pbdata/saf/AlnGroup.hpp
include/blasr_libcpp/pbdata/saf/AlnInfo.hpp
include/blasr_libcpp/pbdata/saf/MovieInfo.hpp
include/blasr_libcpp/pbdata/saf/RefGroup.hpp
include/blasr_libcpp/pbdata/saf/RefInfo.hpp
include/blasr_libcpp/pbdata/sam/AlignmentSet.hpp
include/blasr_libcpp/pbdata/sam/AlignmentSetImpl.hpp
include/blasr_libcpp/pbdata/sam/CigarString.h
include/blasr_libcpp/pbdata/sam/ReadGroup.hpp
include/blasr_libcpp/pbdata/sam/ReferenceSequence.hpp
include/blasr_libcpp/pbdata/sam/SAMAlignment.hpp
include/blasr_libcpp/pbdata/sam/SAMFlag.h
include/blasr_libcpp/pbdata/sam/SAMHeader.hpp
include/blasr_libcpp/pbdata/sam/SAMKeywordValuePair.hpp
include/blasr_libcpp/pbdata/sam/SAMKeywordValuePairImpl.hpp
include/blasr_libcpp/pbdata/sam/SAMReader.hpp
include/blasr_libcpp/pbdata/sam/SAMReaderImpl.hpp
include/blasr_libcpp/pbdata/utils.hpp
include/blasr_libcpp/pbdata/utils/BitUtils.hpp
include/blasr_libcpp/pbdata/utils/SMRTReadUtils.hpp
include/blasr_libcpp/pbdata/utils/SMRTTitle.hpp
include/blasr_libcpp/pbdata/utilsImpl.hpp
include/blasr_libcpp/unittest/pbdata/testdata.h
lib/libblasr.a
lib/libpbdata.a
lib/libpbihdf.a