pkgsrc-wip/emboss-base/PLIST

1447 lines
48 KiB
Plaintext

@comment $NetBSD: PLIST,v 1.4 2009/10/11 10:44:34 thomasklausner Exp $
bin/aaindexextract
bin/abiview
bin/acdc
bin/acdpretty
bin/acdtable
bin/acdtrace
bin/acdvalid
bin/antigenic
bin/backtranseq
bin/banana
bin/biosed
bin/btwisted
bin/cai
bin/chaos
bin/charge
bin/checktrans
bin/chips
bin/cirdna
bin/codcmp
bin/coderet
bin/compseq
bin/cons
bin/cpgplot
bin/cpgreport
bin/cusp
bin/cutgextract
bin/cutseq
bin/dan
bin/dbiblast
bin/dbifasta
bin/dbiflat
bin/dbigcg
bin/degapseq
bin/descseq
bin/diffseq
bin/distmat
bin/dotmatcher
bin/dotpath
bin/dottup
bin/dreg
bin/edigest
bin/einverted
bin/embossdata
bin/embossversion
bin/emma
bin/emowse
bin/entret
bin/epestfind
bin/eprimer3
bin/equicktandem
bin/est2genome
bin/etandem
bin/extractfeat
bin/extractseq
bin/findkm
bin/freak
bin/fuzznuc
bin/fuzzpro
bin/fuzztran
bin/garnier
bin/geecee
bin/getorf
bin/helixturnhelix
bin/hmoment
bin/iep
bin/infoalign
bin/infoseq
bin/isochore
bin/jembossctl
bin/lindna
bin/listor
bin/marscan
bin/maskfeat
bin/maskseq
bin/matcher
bin/megamerger
bin/merger
bin/msbar
bin/mwcontam
bin/mwfilter
bin/needle
bin/newcpgreport
bin/newcpgseek
bin/newseq
bin/noreturn
bin/notseq
bin/nthseq
bin/octanol
bin/oddcomp
bin/palindrome
bin/pasteseq
bin/patmatdb
bin/patmatmotifs
bin/pepcoil
bin/pepinfo
bin/pepnet
bin/pepstats
bin/pepwheel
bin/pepwindow
bin/pepwindowall
bin/plotcon
bin/plotorf
bin/polydot
bin/preg
bin/prettyplot
bin/prettyseq
bin/primersearch
bin/printsextract
bin/profit
bin/prophecy
bin/prophet
bin/prosextract
bin/pscan
bin/psiphi
bin/rebaseextract
bin/recoder
bin/redata
bin/remap
bin/restover
bin/restrict
bin/revseq
bin/seealso
bin/seqmatchall
bin/seqret
bin/seqretsplit
bin/showalign
bin/showdb
bin/showfeat
bin/showorf
bin/showseq
bin/shuffleseq
bin/sigcleave
bin/silent
bin/sirna
bin/sixpack
bin/skipseq
bin/splitter
bin/stretcher
bin/stssearch
bin/supermatcher
bin/syco
bin/tcode
bin/textsearch
bin/tfextract
bin/tfm
bin/tfscan
bin/tmap
bin/tranalign
bin/transeq
bin/trimest
bin/trimseq
bin/twofeat
bin/union
bin/vectorstrip
bin/water
bin/whichdb
bin/wobble
bin/wordcount
bin/wordmatch
bin/wossname
bin/yank
include/emboss/ajacd.h
include/emboss/ajalign.h
include/emboss/ajarch.h
include/emboss/ajarr.h
include/emboss/ajassert.h
include/emboss/ajax.h
include/emboss/ajbase.h
include/emboss/ajcall.h
include/emboss/ajcod.h
include/emboss/ajdan.h
include/emboss/ajdefine.h
include/emboss/ajdmx.h
include/emboss/ajdomain.h
include/emboss/ajexcept.h
include/emboss/ajfeat.h
include/emboss/ajfeatdata.h
include/emboss/ajfile.h
include/emboss/ajfmt.h
include/emboss/ajgraph.h
include/emboss/ajgraphstruct.h
include/emboss/ajgraphxml.h
include/emboss/ajhist.h
include/emboss/ajjava.h
include/emboss/ajlist.h
include/emboss/ajmath.h
include/emboss/ajmatrices.h
include/emboss/ajmem.h
include/emboss/ajmess.h
include/emboss/ajnam.h
include/emboss/ajnexus.h
include/emboss/ajpdb.h
include/emboss/ajpdbio.h
include/emboss/ajphylo.h
include/emboss/ajrange.h
include/emboss/ajreg.h
include/emboss/ajreport.h
include/emboss/ajseq.h
include/emboss/ajseqabi.h
include/emboss/ajseqdata.h
include/emboss/ajseqdb.h
include/emboss/ajseqread.h
include/emboss/ajseqtype.h
include/emboss/ajseqwrite.h
include/emboss/ajsort.h
include/emboss/ajstr.h
include/emboss/ajsys.h
include/emboss/ajtable.h
include/emboss/ajtime.h
include/emboss/ajtranslate.h
include/emboss/ajtree.h
include/emboss/ajutil.h
include/emboss/ajvector.h
include/emboss/drivers.h
include/emboss/embaln.h
include/emboss/embcom.h
include/emboss/embcons.h
include/emboss/embdata.h
include/emboss/embdbi.h
include/emboss/embdmx.h
include/emboss/embdomain.h
include/emboss/embest.h
include/emboss/embexit.h
include/emboss/embgotoh.h
include/emboss/embgroup.h
include/emboss/embiep.h
include/emboss/embindex.h
include/emboss/embinit.h
include/emboss/embmat.h
include/emboss/embmisc.h
include/emboss/embmol.h
include/emboss/embnmer.h
include/emboss/emboss.h
include/emboss/embpat.h
include/emboss/embpdb.h
include/emboss/embprop.h
include/emboss/embread.h
include/emboss/embshow.h
include/emboss/embsig.h
include/emboss/embword.h
include/emboss/metadefs.h
include/emboss/pcre.h
include/emboss/pcre_chartables.c
include/emboss/pcre_config.h
include/emboss/pcre_get.c
include/emboss/pcre_internal.h
include/emboss/pcre_printint.c
include/emboss/pcreposix.h
include/emboss/pdf.h
include/emboss/plConfig.h
include/emboss/plDevs.h
include/emboss/plcore.h
include/emboss/pldebug.h
include/emboss/plevent.h
include/emboss/plplot.h
include/emboss/plplotP.h
include/emboss/plstrm.h
include/emboss/plxwd.h
lib/libajax.la
lib/libajaxg.la
lib/libnucleus.la
lib/libplplot.la
share/EMBOSS/acd/aaindexextract.acd
share/EMBOSS/acd/abiview.acd
share/EMBOSS/acd/ajbad.acd
share/EMBOSS/acd/ajfeatest.acd
share/EMBOSS/acd/ajtest.acd
share/EMBOSS/acd/antigenic.acd
share/EMBOSS/acd/backtranseq.acd
share/EMBOSS/acd/banana.acd
share/EMBOSS/acd/biosed.acd
share/EMBOSS/acd/btwisted.acd
share/EMBOSS/acd/cai.acd
share/EMBOSS/acd/chaos.acd
share/EMBOSS/acd/charge.acd
share/EMBOSS/acd/checktrans.acd
share/EMBOSS/acd/chips.acd
share/EMBOSS/acd/cirdna.acd
share/EMBOSS/acd/codcmp.acd
share/EMBOSS/acd/coderet.acd
share/EMBOSS/acd/codes.english
share/EMBOSS/acd/complex.acd
share/EMBOSS/acd/compseq.acd
share/EMBOSS/acd/cons.acd
share/EMBOSS/acd/corbatest.acd
share/EMBOSS/acd/cpgplot.acd
share/EMBOSS/acd/cpgreport.acd
share/EMBOSS/acd/cusp.acd
share/EMBOSS/acd/cutgextract.acd
share/EMBOSS/acd/cutseq.acd
share/EMBOSS/acd/dan.acd
share/EMBOSS/acd/dbiblast.acd
share/EMBOSS/acd/dbifasta.acd
share/EMBOSS/acd/dbiflat.acd
share/EMBOSS/acd/dbigcg.acd
share/EMBOSS/acd/degapseq.acd
share/EMBOSS/acd/demoalign.acd
share/EMBOSS/acd/demofeatures.acd
share/EMBOSS/acd/demolist.acd
share/EMBOSS/acd/demoreport.acd
share/EMBOSS/acd/demosequence.acd
share/EMBOSS/acd/demostring.acd
share/EMBOSS/acd/demotable.acd
share/EMBOSS/acd/descseq.acd
share/EMBOSS/acd/diffseq.acd
share/EMBOSS/acd/distmat.acd
share/EMBOSS/acd/dotmatcher.acd
share/EMBOSS/acd/dotpath.acd
share/EMBOSS/acd/dottup.acd
share/EMBOSS/acd/dreg.acd
share/EMBOSS/acd/edigest.acd
share/EMBOSS/acd/einverted.acd
share/EMBOSS/acd/embossdata.acd
share/EMBOSS/acd/embossversion.acd
share/EMBOSS/acd/emma.acd
share/EMBOSS/acd/emowse.acd
share/EMBOSS/acd/entrails.acd
share/EMBOSS/acd/entret.acd
share/EMBOSS/acd/epestfind.acd
share/EMBOSS/acd/eprimer3.acd
share/EMBOSS/acd/equicktandem.acd
share/EMBOSS/acd/est2genome.acd
share/EMBOSS/acd/etandem.acd
share/EMBOSS/acd/extractfeat.acd
share/EMBOSS/acd/extractseq.acd
share/EMBOSS/acd/findkm.acd
share/EMBOSS/acd/freak.acd
share/EMBOSS/acd/fuzznuc.acd
share/EMBOSS/acd/fuzzpro.acd
share/EMBOSS/acd/fuzztran.acd
share/EMBOSS/acd/garnier.acd
share/EMBOSS/acd/geecee.acd
share/EMBOSS/acd/getorf.acd
share/EMBOSS/acd/groups.standard
share/EMBOSS/acd/helixturnhelix.acd
share/EMBOSS/acd/histogramtest.acd
share/EMBOSS/acd/hmoment.acd
share/EMBOSS/acd/iep.acd
share/EMBOSS/acd/infoalign.acd
share/EMBOSS/acd/infoseq.acd
share/EMBOSS/acd/isochore.acd
share/EMBOSS/acd/lindna.acd
share/EMBOSS/acd/listor.acd
share/EMBOSS/acd/marscan.acd
share/EMBOSS/acd/maskfeat.acd
share/EMBOSS/acd/maskseq.acd
share/EMBOSS/acd/matcher.acd
share/EMBOSS/acd/megamerger.acd
share/EMBOSS/acd/merger.acd
share/EMBOSS/acd/msbar.acd
share/EMBOSS/acd/mwcontam.acd
share/EMBOSS/acd/mwfilter.acd
share/EMBOSS/acd/needle.acd
share/EMBOSS/acd/newcoils.acd
share/EMBOSS/acd/newcpgreport.acd
share/EMBOSS/acd/newcpgseek.acd
share/EMBOSS/acd/newseq.acd
share/EMBOSS/acd/noreturn.acd
share/EMBOSS/acd/notseq.acd
share/EMBOSS/acd/nthseq.acd
share/EMBOSS/acd/octanol.acd
share/EMBOSS/acd/oddcomp.acd
share/EMBOSS/acd/palindrome.acd
share/EMBOSS/acd/pasteseq.acd
share/EMBOSS/acd/patmatdb.acd
share/EMBOSS/acd/patmatmotifs.acd
share/EMBOSS/acd/patmattest.acd
share/EMBOSS/acd/pepcoil.acd
share/EMBOSS/acd/pepinfo.acd
share/EMBOSS/acd/pepnet.acd
share/EMBOSS/acd/pepstats.acd
share/EMBOSS/acd/pepwheel.acd
share/EMBOSS/acd/pepwindow.acd
share/EMBOSS/acd/pepwindowall.acd
share/EMBOSS/acd/plotcon.acd
share/EMBOSS/acd/plotorf.acd
share/EMBOSS/acd/polydot.acd
share/EMBOSS/acd/preg.acd
share/EMBOSS/acd/prettyplot.acd
share/EMBOSS/acd/prettyseq.acd
share/EMBOSS/acd/prima.acd
share/EMBOSS/acd/primers.acd
share/EMBOSS/acd/primersearch.acd
share/EMBOSS/acd/printsextract.acd
share/EMBOSS/acd/profit.acd
share/EMBOSS/acd/prophecy.acd
share/EMBOSS/acd/prophet.acd
share/EMBOSS/acd/prosextract.acd
share/EMBOSS/acd/pscan.acd
share/EMBOSS/acd/rebaseextract.acd
share/EMBOSS/acd/recoder.acd
share/EMBOSS/acd/redata.acd
share/EMBOSS/acd/remap.acd
share/EMBOSS/acd/restover.acd
share/EMBOSS/acd/restrict.acd
share/EMBOSS/acd/revseq.acd
share/EMBOSS/acd/sections.standard
share/EMBOSS/acd/seealso.acd
share/EMBOSS/acd/seqinfo.acd
share/EMBOSS/acd/seqmatchall.acd
share/EMBOSS/acd/seqret.acd
share/EMBOSS/acd/seqretall.acd
share/EMBOSS/acd/seqretallfeat.acd
share/EMBOSS/acd/seqretset.acd
share/EMBOSS/acd/seqretsingle.acd
share/EMBOSS/acd/seqretsplit.acd
share/EMBOSS/acd/seqrettype.acd
share/EMBOSS/acd/showalign.acd
share/EMBOSS/acd/showdb.acd
share/EMBOSS/acd/showfeat.acd
share/EMBOSS/acd/showorf.acd
share/EMBOSS/acd/showseq.acd
share/EMBOSS/acd/shuffleseq.acd
share/EMBOSS/acd/sigcleave.acd
share/EMBOSS/acd/silent.acd
share/EMBOSS/acd/sirna.acd
share/EMBOSS/acd/sixpack.acd
share/EMBOSS/acd/skipseq.acd
share/EMBOSS/acd/splitter.acd
share/EMBOSS/acd/stretcher.acd
share/EMBOSS/acd/stssearch.acd
share/EMBOSS/acd/supermatcher.acd
share/EMBOSS/acd/syco.acd
share/EMBOSS/acd/tcode.acd
share/EMBOSS/acd/testplot.acd
share/EMBOSS/acd/textsearch.acd
share/EMBOSS/acd/tfextract.acd
share/EMBOSS/acd/tfm.acd
share/EMBOSS/acd/tfscan.acd
share/EMBOSS/acd/tmap.acd
share/EMBOSS/acd/tranalign.acd
share/EMBOSS/acd/transeq.acd
share/EMBOSS/acd/treetypedisplay.acd
share/EMBOSS/acd/trimest.acd
share/EMBOSS/acd/trimseq.acd
share/EMBOSS/acd/twofeat.acd
share/EMBOSS/acd/union.acd
share/EMBOSS/acd/vectorstrip.acd
share/EMBOSS/acd/water.acd
share/EMBOSS/acd/whichdb.acd
share/EMBOSS/acd/wobble.acd
share/EMBOSS/acd/wordcount.acd
share/EMBOSS/acd/wordmatch.acd
share/EMBOSS/acd/wossname.acd
share/EMBOSS/acd/yank.acd
share/EMBOSS/data/AAINDEX/dummyfile
share/EMBOSS/data/CODONS/Eacc.cut
share/EMBOSS/data/CODONS/Eadenovirus5.cut
share/EMBOSS/data/CODONS/Eadenovirus7.cut
share/EMBOSS/data/CODONS/Eaidlav.cut
share/EMBOSS/data/CODONS/Eanasp.cut
share/EMBOSS/data/CODONS/Eani.cut
share/EMBOSS/data/CODONS/Eani_h.cut
share/EMBOSS/data/CODONS/Eanidmit.cut
share/EMBOSS/data/CODONS/Easn.cut
share/EMBOSS/data/CODONS/Eath.cut
share/EMBOSS/data/CODONS/Eatu.cut
share/EMBOSS/data/CODONS/Eavi.cut
share/EMBOSS/data/CODONS/Ebja.cut
share/EMBOSS/data/CODONS/Ebly.cut
share/EMBOSS/data/CODONS/Ebme.cut
share/EMBOSS/data/CODONS/Ebmo.cut
share/EMBOSS/data/CODONS/Ebna.cut
share/EMBOSS/data/CODONS/Ebov.cut
share/EMBOSS/data/CODONS/Ebovsp.cut
share/EMBOSS/data/CODONS/Ebst.cut
share/EMBOSS/data/CODONS/Ebsu.cut
share/EMBOSS/data/CODONS/Ebsu_h.cut
share/EMBOSS/data/CODONS/Ecac.cut
share/EMBOSS/data/CODONS/Ecal.cut
share/EMBOSS/data/CODONS/Eccr.cut
share/EMBOSS/data/CODONS/Ecel.cut
share/EMBOSS/data/CODONS/Echi.cut
share/EMBOSS/data/CODONS/Echicken.cut
share/EMBOSS/data/CODONS/Echisp.cut
share/EMBOSS/data/CODONS/Echk.cut
share/EMBOSS/data/CODONS/Echmp.cut
share/EMBOSS/data/CODONS/Echnt.cut
share/EMBOSS/data/CODONS/Echos.cut
share/EMBOSS/data/CODONS/Echzm.cut
share/EMBOSS/data/CODONS/Echzmrubp.cut
share/EMBOSS/data/CODONS/Ecpx.cut
share/EMBOSS/data/CODONS/Ecre.cut
share/EMBOSS/data/CODONS/Ecrisp.cut
share/EMBOSS/data/CODONS/Ectr.cut
share/EMBOSS/data/CODONS/Edayhoff.cut
share/EMBOSS/data/CODONS/Eddi.cut
share/EMBOSS/data/CODONS/Eddi_h.cut
share/EMBOSS/data/CODONS/Edog.cut
share/EMBOSS/data/CODONS/Edro.cut
share/EMBOSS/data/CODONS/Edro_h.cut
share/EMBOSS/data/CODONS/Edrosophila.cut
share/EMBOSS/data/CODONS/Eeca.cut
share/EMBOSS/data/CODONS/Eeco.cut
share/EMBOSS/data/CODONS/Eeco_h.cut
share/EMBOSS/data/CODONS/Eecoli.cut
share/EMBOSS/data/CODONS/Ef1.cut
share/EMBOSS/data/CODONS/Efish.cut
share/EMBOSS/data/CODONS/Efmdvpolyp.cut
share/EMBOSS/data/CODONS/Eham.cut
share/EMBOSS/data/CODONS/Ehha.cut
share/EMBOSS/data/CODONS/Ehin.cut
share/EMBOSS/data/CODONS/Ehma.cut
share/EMBOSS/data/CODONS/Ehum.cut
share/EMBOSS/data/CODONS/Ehuman.cut
share/EMBOSS/data/CODONS/Ekla.cut
share/EMBOSS/data/CODONS/Ekpn.cut
share/EMBOSS/data/CODONS/Ella.cut
share/EMBOSS/data/CODONS/Emac.cut
share/EMBOSS/data/CODONS/Emaize.cut
share/EMBOSS/data/CODONS/Emam_h.cut
share/EMBOSS/data/CODONS/Emixlg.cut
share/EMBOSS/data/CODONS/Emouse.cut
share/EMBOSS/data/CODONS/Emsa.cut
share/EMBOSS/data/CODONS/Emse.cut
share/EMBOSS/data/CODONS/Emta.cut
share/EMBOSS/data/CODONS/Emtu.cut
share/EMBOSS/data/CODONS/Emus.cut
share/EMBOSS/data/CODONS/Emussp.cut
share/EMBOSS/data/CODONS/Emva.cut
share/EMBOSS/data/CODONS/Emze.cut
share/EMBOSS/data/CODONS/Emzecp.cut
share/EMBOSS/data/CODONS/Encr.cut
share/EMBOSS/data/CODONS/Eneu.cut
share/EMBOSS/data/CODONS/Engo.cut
share/EMBOSS/data/CODONS/Eoncsp.cut
share/EMBOSS/data/CODONS/Epae.cut
share/EMBOSS/data/CODONS/Epea.cut
share/EMBOSS/data/CODONS/Epet.cut
share/EMBOSS/data/CODONS/Epfa.cut
share/EMBOSS/data/CODONS/Ephix174.cut
share/EMBOSS/data/CODONS/Ephv.cut
share/EMBOSS/data/CODONS/Ephy.cut
share/EMBOSS/data/CODONS/Epig.cut
share/EMBOSS/data/CODONS/Epolyomaa2.cut
share/EMBOSS/data/CODONS/Epombe.cut
share/EMBOSS/data/CODONS/Epombecai.cut
share/EMBOSS/data/CODONS/Epot.cut
share/EMBOSS/data/CODONS/Eppu.cut
share/EMBOSS/data/CODONS/Epse.cut
share/EMBOSS/data/CODONS/Epsy.cut
share/EMBOSS/data/CODONS/Epvu.cut
share/EMBOSS/data/CODONS/Erab.cut
share/EMBOSS/data/CODONS/Erabbit.cut
share/EMBOSS/data/CODONS/Erabsp.cut
share/EMBOSS/data/CODONS/Erat.cut
share/EMBOSS/data/CODONS/Eratsp.cut
share/EMBOSS/data/CODONS/Erca.cut
share/EMBOSS/data/CODONS/Erhm.cut
share/EMBOSS/data/CODONS/Eric.cut
share/EMBOSS/data/CODONS/Erle.cut
share/EMBOSS/data/CODONS/Erme.cut
share/EMBOSS/data/CODONS/Ersp.cut
share/EMBOSS/data/CODONS/Esalsp.cut
share/EMBOSS/data/CODONS/Esau.cut
share/EMBOSS/data/CODONS/Esco.cut
share/EMBOSS/data/CODONS/Esgi.cut
share/EMBOSS/data/CODONS/Eshp.cut
share/EMBOSS/data/CODONS/Eshpsp.cut
share/EMBOSS/data/CODONS/Esli.cut
share/EMBOSS/data/CODONS/Eslm.cut
share/EMBOSS/data/CODONS/Esma.cut
share/EMBOSS/data/CODONS/Esmi.cut
share/EMBOSS/data/CODONS/Esmu.cut
share/EMBOSS/data/CODONS/Esoy.cut
share/EMBOSS/data/CODONS/Espi.cut
share/EMBOSS/data/CODONS/Espn.cut
share/EMBOSS/data/CODONS/Espo.cut
share/EMBOSS/data/CODONS/Espo_h.cut
share/EMBOSS/data/CODONS/Espu.cut
share/EMBOSS/data/CODONS/Esta.cut
share/EMBOSS/data/CODONS/Esty.cut
share/EMBOSS/data/CODONS/Esus.cut
share/EMBOSS/data/CODONS/Esv40.cut
share/EMBOSS/data/CODONS/Esyhsp.cut
share/EMBOSS/data/CODONS/Esynsp.cut
share/EMBOSS/data/CODONS/Etbr.cut
share/EMBOSS/data/CODONS/Etcr.cut
share/EMBOSS/data/CODONS/Eter.cut
share/EMBOSS/data/CODONS/Etetsp.cut
share/EMBOSS/data/CODONS/Etob.cut
share/EMBOSS/data/CODONS/Etobcp.cut
share/EMBOSS/data/CODONS/Etom.cut
share/EMBOSS/data/CODONS/Etrb.cut
share/EMBOSS/data/CODONS/Evco.cut
share/EMBOSS/data/CODONS/Ewht.cut
share/EMBOSS/data/CODONS/Exel.cut
share/EMBOSS/data/CODONS/Exenopus.cut
share/EMBOSS/data/CODONS/Eyeast.cut
share/EMBOSS/data/CODONS/Eyeastcai.cut
share/EMBOSS/data/CODONS/Eyen.cut
share/EMBOSS/data/CODONS/Eysc.cut
share/EMBOSS/data/CODONS/Eysc_h.cut
share/EMBOSS/data/CODONS/Eyscmt.cut
share/EMBOSS/data/CODONS/Eysp.cut
share/EMBOSS/data/CODONS/Ezebrafish.cut
share/EMBOSS/data/CODONS/Ezma.cut
share/EMBOSS/data/EBLOSUM30
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