61 lines
1.8 KiB
Makefile
61 lines
1.8 KiB
Makefile
# $NetBSD$
|
|
#
|
|
###########################################################
|
|
# Generated by fbsd2pkg #
|
|
# Fri Nov 3 16:02:27 CDT 2017 #
|
|
###########################################################
|
|
|
|
DISTNAME= fastqc_v${PORTVERSION}
|
|
PKGNAME= fastqc-${PORTVERSION}
|
|
CATEGORIES= biology
|
|
MASTER_SITES= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
|
|
EXTRACT_SUFX= .zip
|
|
|
|
MAINTAINER= bacon@NetBSD.org
|
|
HOMEPAGE= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
|
|
COMMENT= Quality control tool for high throughput sequence data
|
|
# Check this
|
|
LICENSE= gnu-gpl-v3
|
|
|
|
SUBST_CLASSES+= javapath
|
|
SUBST_STAGE.javapath= post-patch
|
|
SUBST_SED.javapath+= -e 's|$$RealBin$$delimiter|${DATADIR}$$delimiter${JAVAJARDIR}/fastqc$$delimiter|g'
|
|
SUBST_SED.javapath+= -e 's|$$RealBin/|${JAVAJARDIR}/fastqc/|g'
|
|
SUBST_FILES.javapath+= ${WRKSRC}/fastqc
|
|
|
|
USE_TOOLS+= perl:run pax
|
|
REPLACE_PERL= fastqc
|
|
NO_BUILD= yes
|
|
|
|
WRKSRC= ${WRKDIR}/FastQC
|
|
|
|
# Normal extract is corrupting org/apache/commons/math3/distribution/IntegerDistribution.class due to a bug in archivers/unzip -a
|
|
EXTRACT_OPTS_ZIP= -qo
|
|
|
|
PORTVERSION= 0.11.5
|
|
DATADIR= ${PREFIX}/share/fastqc
|
|
DOCSDIR= ${PREFIX}/share/doc/fastqc
|
|
USE_JAVA= yes
|
|
JAVAJARDIR= ${PREFIX}/share/java/classes
|
|
|
|
INSTALLATION_DIRS= bin ${DATADIR} ${DOCSDIR} ${JAVAJARDIR}/fastqc
|
|
|
|
do-install:
|
|
${INSTALL_DATA} ${WRKSRC}/*.jar ${DESTDIR}${JAVAJARDIR}/fastqc
|
|
${INSTALL_SCRIPT} ${WRKSRC}/fastqc \
|
|
${DESTDIR}${PREFIX}/bin
|
|
cd ${WRKSRC} && pax -rw Configuration \
|
|
${DESTDIR}${DATADIR}
|
|
cd ${WRKSRC} && pax -rw Templates \
|
|
${DESTDIR}${DATADIR}
|
|
cd ${WRKSRC} && pax -rw net \
|
|
${DESTDIR}${JAVAJARDIR}/fastqc
|
|
cd ${WRKSRC} && pax -rw org \
|
|
${DESTDIR}${JAVAJARDIR}/fastqc
|
|
cd ${WRKSRC} && pax -rw uk \
|
|
${DESTDIR}${JAVAJARDIR}/fastqc
|
|
cd ${WRKSRC} && pax -rw 'Help' \
|
|
${DESTDIR}${DOCSDIR}
|
|
|
|
.include "../../mk/bsd.pkg.mk"
|