700 lines
26 KiB
Plaintext
700 lines
26 KiB
Plaintext
@comment $NetBSD$
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bin/GMXRC
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bin/GMXRC.bash
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bin/GMXRC.csh
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bin/GMXRC.zsh
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bin/demux.pl
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bin/gmx
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bin/gmx-completion-gmx.bash
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bin/gmx-completion.bash
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bin/xplor2gmx.pl
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include/gromacs/analysisdata.h
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include/gromacs/analysisdata/abstractdata.h
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include/gromacs/analysisdata/analysisdata.h
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include/gromacs/analysisdata/arraydata.h
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include/gromacs/analysisdata/dataframe.h
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include/gromacs/analysisdata/datamodule.h
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include/gromacs/analysisdata/modules/average.h
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include/gromacs/analysisdata/modules/displacement.h
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include/gromacs/analysisdata/modules/histogram.h
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include/gromacs/analysisdata/modules/lifetime.h
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include/gromacs/analysisdata/modules/plot.h
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include/gromacs/commandline.h
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include/gromacs/commandline/cmdlinehelpwriter.h
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include/gromacs/commandline/cmdlineinit.h
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include/gromacs/commandline/cmdlinemodule.h
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include/gromacs/commandline/cmdlineoptionsmodule.h
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include/gromacs/commandline/cmdlineparser.h
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include/gromacs/commandline/cmdlineprogramcontext.h
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include/gromacs/commandline/filenm.h
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include/gromacs/commandline/pargs.h
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include/gromacs/commandline/viewit.h
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include/gromacs/fft/fft.h
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include/gromacs/fileio/confio.h
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include/gromacs/fileio/enxio.h
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include/gromacs/fileio/filetypes.h
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include/gromacs/fileio/gmxfio.h
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include/gromacs/fileio/matio.h
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include/gromacs/fileio/mtxio.h
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include/gromacs/fileio/oenv.h
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include/gromacs/fileio/pdbio.h
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include/gromacs/fileio/rgb.h
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include/gromacs/fileio/tpxio.h
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include/gromacs/fileio/trrio.h
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include/gromacs/fileio/trxio.h
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include/gromacs/fileio/xdr_datatype.h
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include/gromacs/fileio/xtcio.h
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include/gromacs/fileio/xvgr.h
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include/gromacs/gmxana/gstat.h
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include/gromacs/gpu_utils/hostallocator.h
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include/gromacs/linearalgebra/eigensolver.h
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include/gromacs/linearalgebra/matrix.h
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include/gromacs/linearalgebra/sparsematrix.h
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include/gromacs/listed-forces/listed-forces.h
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include/gromacs/math/3dtransforms.h
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include/gromacs/math/do_fit.h
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include/gromacs/math/functions.h
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include/gromacs/math/gmxcomplex.h
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include/gromacs/math/paddedvector.h
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include/gromacs/math/units.h
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include/gromacs/math/utilities.h
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include/gromacs/math/vec.h
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include/gromacs/math/vectypes.h
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include/gromacs/mdtypes/inputrec.h
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include/gromacs/mdtypes/md_enums.h
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include/gromacs/mdtypes/mdatom.h
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include/gromacs/mdtypes/state.h
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include/gromacs/options.h
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include/gromacs/options/abstractoption.h
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include/gromacs/options/abstractsection.h
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include/gromacs/options/basicoptions.h
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include/gromacs/options/filenameoption.h
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include/gromacs/options/filenameoptionmanager.h
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include/gromacs/options/ioptionsbehavior.h
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include/gromacs/options/ioptionscontainer.h
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include/gromacs/options/ioptionscontainerwithsections.h
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include/gromacs/options/isectionstorage.h
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include/gromacs/options/ivaluestore.h
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include/gromacs/options/optionfiletype.h
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include/gromacs/options/optionflags.h
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include/gromacs/options/options.h
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include/gromacs/options/optionsection.h
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include/gromacs/options/repeatingsection.h
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include/gromacs/options/timeunitmanager.h
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include/gromacs/options/valuestore.h
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include/gromacs/pbcutil/ishift.h
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include/gromacs/pbcutil/pbc.h
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include/gromacs/pbcutil/rmpbc.h
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include/gromacs/random.h
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include/gromacs/random/exponentialdistribution.h
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include/gromacs/random/gammadistribution.h
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include/gromacs/random/normaldistribution.h
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include/gromacs/random/seed.h
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include/gromacs/random/tabulatednormaldistribution.h
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include/gromacs/random/threefry.h
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include/gromacs/random/uniformintdistribution.h
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include/gromacs/random/uniformrealdistribution.h
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include/gromacs/selection.h
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include/gromacs/selection/indexutil.h
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include/gromacs/selection/nbsearch.h
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include/gromacs/selection/position.h
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include/gromacs/selection/selection.h
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include/gromacs/selection/selectioncollection.h
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include/gromacs/selection/selectionenums.h
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include/gromacs/selection/selectionoption.h
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include/gromacs/selection/selectionoptionbehavior.h
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include/gromacs/selection/selectionoptionmanager.h
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include/gromacs/timing/wallcycle.h
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include/gromacs/timing/walltime_accounting.h
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include/gromacs/topology/atomprop.h
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include/gromacs/topology/atoms.h
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include/gromacs/topology/block.h
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include/gromacs/topology/idef.h
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include/gromacs/topology/index.h
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include/gromacs/topology/mtop_util.h
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include/gromacs/topology/symtab.h
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include/gromacs/topology/topology.h
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include/gromacs/trajectory/energy.h
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include/gromacs/trajectory/trajectoryframe.h
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include/gromacs/trajectoryanalysis.h
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include/gromacs/trajectoryanalysis/analysismodule.h
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include/gromacs/trajectoryanalysis/analysissettings.h
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include/gromacs/trajectoryanalysis/cmdlinerunner.h
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include/gromacs/utility.h
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include/gromacs/utility/alignedallocator.h
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include/gromacs/utility/allocator.h
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include/gromacs/utility/arrayref.h
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include/gromacs/utility/arraysize.h
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include/gromacs/utility/basedefinitions.h
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include/gromacs/utility/baseversion.h
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include/gromacs/utility/classhelpers.h
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include/gromacs/utility/cstringutil.h
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include/gromacs/utility/current_function.h
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include/gromacs/utility/datafilefinder.h
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include/gromacs/utility/errorcodes.h
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include/gromacs/utility/exceptions.h
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include/gromacs/utility/fatalerror.h
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include/gromacs/utility/flags.h
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include/gromacs/utility/futil.h
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include/gromacs/utility/gmxassert.h
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include/gromacs/utility/init.h
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include/gromacs/utility/programcontext.h
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include/gromacs/utility/real.h
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include/gromacs/utility/smalloc.h
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include/gromacs/utility/stringutil.h
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include/gromacs/version.h
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lib/libgromacs.so
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lib/libgromacs.so.3
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lib/libgromacs.so.3.4.0
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lib/pkgconfig/libgromacs.pc
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man/man1/gmx-anadock.1
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man/man1/gmx-anaeig.1
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man/man1/gmx-analyze.1
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man/man1/gmx-angle.1
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man/man1/gmx-awh.1
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man/man1/gmx-bar.1
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man/man1/gmx-bundle.1
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man/man1/gmx-check.1
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man/man1/gmx-chi.1
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man/man1/gmx-cluster.1
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man/man1/gmx-clustsize.1
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man/man1/gmx-confrms.1
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man/man1/gmx-convert-tpr.1
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man/man1/gmx-covar.1
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man/man1/gmx-current.1
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man/man1/gmx-density.1
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man/man1/gmx-densmap.1
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man/man1/gmx-densorder.1
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man/man1/gmx-dielectric.1
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man/man1/gmx-dipoles.1
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man/man1/gmx-disre.1
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man/man1/gmx-distance.1
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man/man1/gmx-do_dssp.1
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man/man1/gmx-dos.1
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man/man1/gmx-dump.1
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man/man1/gmx-dyecoupl.1
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man/man1/gmx-dyndom.1
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man/man1/gmx-editconf.1
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man/man1/gmx-eneconv.1
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man/man1/gmx-enemat.1
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man/man1/gmx-energy.1
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man/man1/gmx-filter.1
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man/man1/gmx-freevolume.1
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man/man1/gmx-gangle.1
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man/man1/gmx-genconf.1
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man/man1/gmx-genion.1
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man/man1/gmx-genrestr.1
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man/man1/gmx-grompp.1
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man/man1/gmx-gyrate.1
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man/man1/gmx-h2order.1
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man/man1/gmx-hbond.1
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man/man1/gmx-helix.1
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man/man1/gmx-helixorient.1
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man/man1/gmx-help.1
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man/man1/gmx-hydorder.1
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man/man1/gmx-insert-molecules.1
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man/man1/gmx-lie.1
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man/man1/gmx-make_edi.1
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man/man1/gmx-make_ndx.1
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man/man1/gmx-mdmat.1
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man/man1/gmx-mdrun.1
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man/man1/gmx-mindist.1
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man/man1/gmx-mk_angndx.1
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man/man1/gmx-morph.1
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man/man1/gmx-msd.1
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man/man1/gmx-nmeig.1
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man/man1/gmx-nmens.1
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man/man1/gmx-nmr.1
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man/man1/gmx-nmtraj.1
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man/man1/gmx-order.1
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man/man1/gmx-pairdist.1
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man/man1/gmx-pdb2gmx.1
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man/man1/gmx-pme_error.1
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man/man1/gmx-polystat.1
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man/man1/gmx-potential.1
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man/man1/gmx-principal.1
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man/man1/gmx-rama.1
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man/man1/gmx-rdf.1
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man/man1/gmx-rms.1
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man/man1/gmx-rmsdist.1
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man/man1/gmx-rmsf.1
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man/man1/gmx-rotacf.1
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man/man1/gmx-rotmat.1
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man/man1/gmx-saltbr.1
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man/man1/gmx-sans.1
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man/man1/gmx-sasa.1
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man/man1/gmx-saxs.1
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man/man1/gmx-select.1
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man/man1/gmx-sham.1
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man/man1/gmx-sigeps.1
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man/man1/gmx-solvate.1
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man/man1/gmx-sorient.1
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man/man1/gmx-spatial.1
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man/man1/gmx-spol.1
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man/man1/gmx-tcaf.1
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man/man1/gmx-traj.1
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man/man1/gmx-trajectory.1
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man/man1/gmx-trjcat.1
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man/man1/gmx-trjconv.1
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man/man1/gmx-trjorder.1
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man/man1/gmx-tune_pme.1
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man/man1/gmx-vanhove.1
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man/man1/gmx-velacc.1
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man/man1/gmx-view.1
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man/man1/gmx-wham.1
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man/man1/gmx-wheel.1
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man/man1/gmx-x2top.1
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man/man1/gmx-xpm2ps.1
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man/man1/gmx.1
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share/cmake/gromacs/gromacs-config-version.cmake
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share/cmake/gromacs/gromacs-config.cmake
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share/cmake/gromacs/libgromacs-release.cmake
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share/cmake/gromacs/libgromacs.cmake
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share/gromacs/COPYING
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share/gromacs/README.tutor
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share/gromacs/README_FreeEnergyModifications.txt
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share/gromacs/template/CMakeLists.txt
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share/gromacs/template/Makefile.pkg
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share/gromacs/template/README
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share/gromacs/template/cmake/FindGROMACS.cmake
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share/gromacs/template/template.cpp
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share/gromacs/top/README
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share/gromacs/top/amber03.ff/aminoacids.arn
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share/gromacs/top/amber03.ff/aminoacids.c.tdb
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share/gromacs/top/amber03.ff/aminoacids.hdb
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share/gromacs/top/amber03.ff/aminoacids.n.tdb
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share/gromacs/top/amber03.ff/aminoacids.r2b
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share/gromacs/top/amber03.ff/aminoacids.rtp
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share/gromacs/top/amber03.ff/aminoacids.vsd
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share/gromacs/top/amber03.ff/atomtypes.atp
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share/gromacs/top/amber03.ff/dna.arn
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share/gromacs/top/amber03.ff/dna.hdb
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share/gromacs/top/amber03.ff/dna.r2b
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share/gromacs/top/amber03.ff/dna.rtp
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share/gromacs/top/amber03.ff/ffbonded.itp
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share/gromacs/top/amber03.ff/ffnonbonded.itp
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share/gromacs/top/amber03.ff/forcefield.doc
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share/gromacs/top/amber03.ff/forcefield.itp
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share/gromacs/top/amber03.ff/gbsa.itp
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share/gromacs/top/amber03.ff/ions.itp
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share/gromacs/top/amber03.ff/rna.arn
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share/gromacs/top/amber03.ff/rna.hdb
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share/gromacs/top/amber03.ff/rna.r2b
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share/gromacs/top/amber03.ff/rna.rtp
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share/gromacs/top/amber03.ff/spc.itp
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share/gromacs/top/amber03.ff/spce.itp
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share/gromacs/top/amber03.ff/tip3p.itp
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share/gromacs/top/amber03.ff/tip4p.itp
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share/gromacs/top/amber03.ff/tip4pew.itp
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share/gromacs/top/amber03.ff/tip5p.itp
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share/gromacs/top/amber03.ff/urea.itp
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share/gromacs/top/amber03.ff/watermodels.dat
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share/gromacs/top/amber94.ff/aminoacids.arn
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share/gromacs/top/amber94.ff/aminoacids.c.tdb
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share/gromacs/top/amber94.ff/aminoacids.hdb
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share/gromacs/top/amber94.ff/aminoacids.n.tdb
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share/gromacs/top/amber94.ff/aminoacids.r2b
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share/gromacs/top/amber94.ff/aminoacids.rtp
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share/gromacs/top/amber94.ff/aminoacids.vsd
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share/gromacs/top/amber94.ff/atomtypes.atp
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share/gromacs/top/amber94.ff/dna.arn
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share/gromacs/top/amber94.ff/dna.hdb
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share/gromacs/top/amber94.ff/dna.r2b
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share/gromacs/top/amber94.ff/dna.rtp
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share/gromacs/top/amber94.ff/ffbonded.itp
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share/gromacs/top/amber94.ff/ffnonbonded.itp
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share/gromacs/top/amber94.ff/forcefield.doc
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share/gromacs/top/amber94.ff/forcefield.itp
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share/gromacs/top/amber94.ff/gbsa.itp
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share/gromacs/top/amber94.ff/ions.itp
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share/gromacs/top/amber94.ff/rna.arn
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share/gromacs/top/amber94.ff/rna.hdb
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share/gromacs/top/amber94.ff/rna.r2b
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share/gromacs/top/amber94.ff/rna.rtp
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share/gromacs/top/amber94.ff/spc.itp
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share/gromacs/top/amber94.ff/spce.itp
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share/gromacs/top/amber94.ff/tip3p.itp
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share/gromacs/top/amber94.ff/tip4p.itp
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share/gromacs/top/amber94.ff/tip4pew.itp
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share/gromacs/top/amber94.ff/tip5p.itp
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share/gromacs/top/amber94.ff/urea.itp
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share/gromacs/top/amber94.ff/watermodels.dat
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share/gromacs/top/amber96.ff/aminoacids.arn
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share/gromacs/top/amber96.ff/aminoacids.c.tdb
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share/gromacs/top/amber96.ff/aminoacids.hdb
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share/gromacs/top/amber96.ff/aminoacids.n.tdb
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share/gromacs/top/amber96.ff/aminoacids.r2b
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share/gromacs/top/amber96.ff/aminoacids.rtp
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share/gromacs/top/amber96.ff/aminoacids.vsd
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share/gromacs/top/amber96.ff/atomtypes.atp
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share/gromacs/top/amber96.ff/dna.arn
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share/gromacs/top/amber96.ff/dna.hdb
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share/gromacs/top/amber96.ff/dna.r2b
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share/gromacs/top/amber96.ff/dna.rtp
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share/gromacs/top/amber96.ff/ffbonded.itp
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share/gromacs/top/amber96.ff/ffnonbonded.itp
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share/gromacs/top/amber96.ff/forcefield.doc
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share/gromacs/top/amber96.ff/forcefield.itp
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share/gromacs/top/amber96.ff/gbsa.itp
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share/gromacs/top/amber96.ff/ions.itp
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share/gromacs/top/amber96.ff/rna.arn
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share/gromacs/top/amber96.ff/rna.hdb
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share/gromacs/top/amber96.ff/rna.r2b
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share/gromacs/top/amber96.ff/rna.rtp
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share/gromacs/top/amber96.ff/spc.itp
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share/gromacs/top/amber96.ff/spce.itp
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share/gromacs/top/amber96.ff/tip3p.itp
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share/gromacs/top/amber96.ff/tip4p.itp
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share/gromacs/top/amber96.ff/tip4pew.itp
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share/gromacs/top/amber96.ff/tip5p.itp
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share/gromacs/top/amber96.ff/urea.itp
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share/gromacs/top/amber96.ff/watermodels.dat
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share/gromacs/top/amber99.ff/aminoacids.arn
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share/gromacs/top/amber99.ff/aminoacids.c.tdb
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share/gromacs/top/amber99.ff/aminoacids.hdb
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share/gromacs/top/amber99.ff/aminoacids.n.tdb
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share/gromacs/top/amber99.ff/aminoacids.r2b
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share/gromacs/top/amber99.ff/aminoacids.rtp
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share/gromacs/top/amber99.ff/aminoacids.vsd
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share/gromacs/top/amber99.ff/atomtypes.atp
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share/gromacs/top/amber99.ff/dna.arn
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share/gromacs/top/amber99.ff/dna.hdb
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share/gromacs/top/amber99.ff/dna.r2b
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share/gromacs/top/amber99.ff/dna.rtp
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share/gromacs/top/amber99.ff/ffbonded.itp
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share/gromacs/top/amber99.ff/ffnonbonded.itp
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share/gromacs/top/amber99.ff/forcefield.doc
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share/gromacs/top/oplsaa.ff/aminoacids.hdb
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share/gromacs/top/oplsaa.ff/aminoacids.n.tdb
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share/gromacs/top/oplsaa.ff/aminoacids.r2b
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share/gromacs/top/oplsaa.ff/aminoacids.rtp
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share/gromacs/top/oplsaa.ff/aminoacids.vsd
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share/gromacs/top/oplsaa.ff/atomname2type.n2t
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share/gromacs/top/oplsaa.ff/atomtypes.atp
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share/gromacs/top/oplsaa.ff/ethanol.itp
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share/gromacs/top/oplsaa.ff/ffbonded.itp
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share/gromacs/top/oplsaa.ff/ffnonbonded.itp
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share/gromacs/top/oplsaa.ff/forcefield.doc
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share/gromacs/top/oplsaa.ff/forcefield.itp
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share/gromacs/top/oplsaa.ff/gbsa.itp
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share/gromacs/top/oplsaa.ff/ions.itp
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share/gromacs/top/oplsaa.ff/methanol.itp
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share/gromacs/top/oplsaa.ff/spc.itp
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share/gromacs/top/oplsaa.ff/spce.itp
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share/gromacs/top/oplsaa.ff/tip3p.itp
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share/gromacs/top/oplsaa.ff/tip4p.itp
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share/gromacs/top/oplsaa.ff/tip4pew.itp
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share/gromacs/top/oplsaa.ff/tip5p.itp
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share/gromacs/top/oplsaa.ff/tip5pe.itp
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share/gromacs/top/oplsaa.ff/watermodels.dat
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share/gromacs/top/phbres.dat
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share/gromacs/top/ps.m2p
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share/gromacs/top/random.dat
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share/gromacs/top/refi_aa.dat
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share/gromacs/top/residues.dtd
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share/gromacs/top/residues.xml
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share/gromacs/top/residuetypes.dat
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share/gromacs/top/sfactor.dat
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share/gromacs/top/spc.itp
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share/gromacs/top/spc216.gro
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share/gromacs/top/spce.itp
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share/gromacs/top/specbond.dat
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share/gromacs/top/ss.map
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share/gromacs/top/surface.dat
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share/gromacs/top/sw.itp
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share/gromacs/top/table6-10.xvg
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share/gromacs/top/table6-11.xvg
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share/gromacs/top/table6-12.xvg
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share/gromacs/top/table6-8.xvg
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share/gromacs/top/table6-9.xvg
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share/gromacs/top/tip3p.itp
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share/gromacs/top/tip4p.gro
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share/gromacs/top/tip4p.itp
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share/gromacs/top/tip5p.gro
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share/gromacs/top/vdw-msms.dat
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share/gromacs/top/vdwradii.dat
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share/gromacs/top/xlateat.dat
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