60 lines
1.8 KiB
Makefile
60 lines
1.8 KiB
Makefile
# $NetBSD$
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#
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###########################################################
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# Generated by fbsd2pkg #
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# Thu Sep 13 14:20:25 CDT 2018 #
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###########################################################
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DISTNAME= salmon-${PV}
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DIST_SUBDIR= salmon
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_GITHUB:=COMBINE-lab/} \
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https://github.com/COMBINE-lab/RapMap/archive/ \
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https://github.com/COMBINE-lab/libgff/archive/ \
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https://github.com/COMBINE-lab/staden-io_lib/archive/
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DISTFILES= salmon-0.11.3.tar.gz salmon-v0.11.3.zip v1.1.tar.gz v1.14.8.1.tar.gz
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EXTRACT_ONLY= salmon-0.11.3.tar.gz v1.14.8.1.tar.gz
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GITHUB_PROJECT= salmon
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GITHUB_TAG= v${PV}
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= https://github.com/COMBINE-lab/salmon
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COMMENT= Transcript-level quantification of RNA-seq from lightweight alignments
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LICENSE= gnu-gpl-v3
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SUBST_CLASSES+= tbb
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SUBST_STAGE.tbb= post-patch
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SUBST_SED.tbb+= -e 's|tbbmalloc_proxy||g'
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SUBST_FILES.tbb+= ${WRKSRC}/CMakeLists.txt
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SUBST_CLASSES+= staden
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SUBST_STAGE.staden= post-patch
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SUBST_SED.staden+= -e 's|&& make|&& gmake|g'
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SUBST_FILES.staden+= ${WRKSRC}/CMakeFiles/libstadenio.dir/build.make
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# Test and change if necessary.
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# MAKE_JOBS_SAFE= no
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DEPENDS= bash>=0:../../shells/bash \
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autoconf>=0:../../devel/autoconf \
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unzip>=0:../../archivers/unzip
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USE_LANGUAGES= c c++
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USE_TOOLS+= cmake gmake
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REPLACE_BASH= scripts/*.sh
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REPLACE_PYTHON= scripts/*.py
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USE_CMAKE= yes
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CMAKE_ARGS+= -DDISTDIR:PATH=${DISTDIR} -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON
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CONFIGURE_ENV+= DISTDIR=${DISTDIR} DIST_SUBDIR=salmon
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LDFLAGS+= -lz
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PV= 0.11.3
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.include "../../devel/libgetopt/buildlink3.mk"
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.include "../../devel/zlib/buildlink3.mk"
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.include "../../devel/boost-libs/buildlink3.mk"
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.include "../../wip/cereal/buildlink3.mk"
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.include "../../wip/tbb/buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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