66 lines
1.9 KiB
Makefile
66 lines
1.9 KiB
Makefile
# $NetBSD$
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#
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###########################################################
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# Generated by fbsd2pkg #
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# Thu May 3 10:32:03 CDT 2018 #
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###########################################################
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DISTNAME= plink-ng-${PV}
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PKGNAME= plink2-${PV}
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PKGREVISION= 1
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_GITHUB:=chrchang/}
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GITHUB_PROJECT= plink-ng
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GITHUB_TAG= 00aaeb53d3edd569c93bd60e7bcd27ced4cd8fdb
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= http://pngu.mgh.harvard.edu/~purcell/plink/
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COMMENT= Whole genome association analysis toolset
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LICENSE= gnu-gpl-v2
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USE_LANGUAGES= c c++ fortran
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USE_TOOLS+= gmake pax
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# RHEL gunzip lacks -k flag
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DEPENDS= gzip>0:../../archivers/gzip
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WRKSRC= ${WRKDIR}/${GITHUB_PROJECT}-${GITHUB_TAG}/2.0
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SUBST_CLASSES+= test
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SUBST_STAGE.test= pre-configure
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SUBST_FILES.test= ${WRKSRC}/Tests/run_tests.sh
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SUBST_SED.test= -e 's|../../build_dynamic|${PREFIX}/bin|g'
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SUBST_SED.test+= -e 's|^python|${PYTHONBIN}|g'
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CFLAGS+= -g -DDYNAMIC_ZLIB -I${PREFIX}/include
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CXXFLAGS+= -g -DDYNAMIC_ZLIB -I${PREFIX}/include
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MAKE_FLAGS+= ZLIB=-lz BLASFLAGS64="-L${PREFIX}/lib -lcblas ${LAPACK_LIBS} ${BLAS_LIBS}"
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# Keep debug info until at least next beta
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# INSTALL_TARGET= install-strip
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PV= 0.0.0.20190202
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USE_BUILTIN.zlib= no
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MAKE_FILE= ${FILESDIR}/Makefile.generic
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DATADIR= ${PREFIX}/share/plink2
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post-patch:
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${SED} -e "s|%%DATADIR%%|${DATADIR}|g" ${FILESDIR}/plink2-test.in \
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> ${WRKDIR}/plink2-test
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post-install:
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(cd ${WRKSRC} && pax -rw Tests ${DESTDIR}${DATADIR})
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${CHMOD} a+x \
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${DESTDIR}${DATADIR}/Tests/run_tests.sh \
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${DESTDIR}${DATADIR}/Tests/*/run_tests.sh
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${INSTALL_SCRIPT} ${WRKDIR}/plink2-test ${DESTDIR}${PREFIX}/bin
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${INSTALL_SCRIPT} ${FILESDIR}/plink2-bench ${DESTDIR}${PREFIX}/bin
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.include "../../mk/blas.buildlink3.mk"
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.include "../../wip/cblas/buildlink3.mk"
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.include "../../lang/python/application.mk"
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.include "../../devel/zlib/buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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