44 lines
1.9 KiB
Plaintext
44 lines
1.9 KiB
Plaintext
@comment $NetBSD$
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bin/TransDecoder.LongOrfs
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bin/TransDecoder.Predict
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lib/TransDecoder/PerlLib/DelimParser.pm
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lib/TransDecoder/PerlLib/Fasta_reader.pm
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lib/TransDecoder/PerlLib/Fasta_retriever.pm
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lib/TransDecoder/PerlLib/GFF3_utils2.pm
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lib/TransDecoder/PerlLib/GTF.pm
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lib/TransDecoder/PerlLib/GTF_utils2.pm
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lib/TransDecoder/PerlLib/Gene_obj.pm
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lib/TransDecoder/PerlLib/Longest_orf.pm
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lib/TransDecoder/PerlLib/Nuc_translator.pm
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lib/TransDecoder/PerlLib/Overlap_piler.pm
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lib/TransDecoder/PerlLib/PWM.pm
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lib/TransDecoder/PerlLib/Pipeliner.pm
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lib/TransDecoder/PerlLib/Process_cmd.pm
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lib/TransDecoder/PerlLib/overlapping_nucs.ph
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libexec/TransDecoder/util/cdna_alignment_orf_to_genome_orf.pl
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libexec/TransDecoder/util/compute_base_probs.pl
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libexec/TransDecoder/util/exclude_similar_proteins.pl
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libexec/TransDecoder/util/fasta_prot_checker.pl
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libexec/TransDecoder/util/ffindex_resume.pl
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libexec/TransDecoder/util/gene_list_to_gff.pl
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libexec/TransDecoder/util/get_FL_accs.pl
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libexec/TransDecoder/util/get_longest_ORF_per_transcript.pl
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libexec/TransDecoder/util/get_top_longest_fasta_entries.pl
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libexec/TransDecoder/util/gff3_file_to_bed.pl
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libexec/TransDecoder/util/gff3_file_to_proteins.pl
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libexec/TransDecoder/util/gff3_gene_to_gtf_format.pl
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libexec/TransDecoder/util/gtf_genome_to_cdna_fasta.pl
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libexec/TransDecoder/util/gtf_to_alignment_gff3.pl
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libexec/TransDecoder/util/gtf_to_bed.pl
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libexec/TransDecoder/util/nr_ORFs_gff3.pl
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libexec/TransDecoder/util/pfam_runner.pl
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libexec/TransDecoder/util/refine_gff3_group_iso_strip_utrs.pl
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libexec/TransDecoder/util/refine_hexamer_scores.pl
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libexec/TransDecoder/util/remove_eclipsed_ORFs.pl
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libexec/TransDecoder/util/score_CDS_likelihood_all_6_frames.pl
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libexec/TransDecoder/util/select_best_ORFs_per_transcript.pl
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libexec/TransDecoder/util/seq_n_baseprobs_to_loglikelihood_vals.pl
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libexec/TransDecoder/util/start_codon_refinement.pl
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libexec/TransDecoder/util/train_start_PWM.pl
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libexec/TransDecoder/util/uri_unescape.pl
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