53 lines
1.8 KiB
Makefile
53 lines
1.8 KiB
Makefile
# $NetBSD$
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#
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###########################################################
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# Generated by fbsd2pkg #
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# Tue Sep 13 12:49:29 CDT 2016 #
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###########################################################
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# FIXME: Searches /usr/local/include before /usr/local/include/PacBio
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# so it will pick up the wrong seqan headers if biology/seqan is installed.
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# Hopefully PacBio's seqan patches will be in the next seqan release.
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DISTNAME= unanimity-${PORTVERSION}
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_GITHUB:=PacificBiosciences/}
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GITHUB_PROJECT= unanimity
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GITHUB_TAG= 054c59530f7ee7c3ce0adde4524f367e8d0244cd
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= https://github.com/PacificBiosciences/unanimity
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COMMENT= Consensus library and applications
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LICENSE= modified-bsd
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MAKE_JOBS_SAFE= yes
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USE_LANGUAGES= c c++
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USE_CMAKE= yes
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GCC_REQD= 4.9 # 4.8 would do, but pbcopper requires 4.9 for json
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CMAKE_ARGS= -DHTSLIB_INCLUDE_DIRS:STRING=${PREFIX}/include/htslib \
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-DHTSLIB_LIBRARIES:STRING="-L${PREFIX}/lib -lhts" \
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-DPacBioBAM_INCLUDE_DIRS:STRING=${PREFIX}/include/pbbam \
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-DPacBioBAM_LIBRARIES:STRING="-L${PREFIX}/lib -lpbbam" \
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-DSEQAN_INCLUDE_DIRS:STRING=${PREFIX}/include/PacBio \
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-Dpbcopper_INCLUDE_DIRS=${PREFIX}/include \
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-Dpbcopper_LIBRARIES="-L${PREFIX}/lib -lpbcopper"
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CXXFLAGS+= -O2
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# Why is this needed with openssl/buildlink3.mk?
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LDFLAGS+= -lssl
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WRKSRC= ${WRKDIR}/unanimity-${GITHUB_TAG}
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PORTVERSION= 2016.09.13
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.include "../../wip/pbseqan/buildlink3.mk"
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.include "../../wip/pbbam/buildlink3.mk"
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.include "../../wip/pbcopper/buildlink3.mk"
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.include "../../biology/htslib/buildlink3.mk"
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.include "../../devel/boost-libs/buildlink3.mk"
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.include "../../security/openssl/buildlink3.mk"
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.include "../../lang/python/application.mk"
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.include "../../mk/bsd.pkg.mk"
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