773 lines
36 KiB
Plaintext
773 lines
36 KiB
Plaintext
@comment $NetBSD: PLIST,v 1.2 2009/10/11 10:44:56 thomasklausner Exp $
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libexec/cgi-bin/AssignLoci.cgi
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libexec/cgi-bin/BER_hypo_display.cgi
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libexec/cgi-bin/BacAnnotationPage.cgi
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libexec/cgi-bin/Manatee/DBmodel_to_geneobj.pm
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libexec/cgi-bin/Manatee/EukManateeDB.pm
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libexec/cgi-bin/Manatee/Gene_obj.pm
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libexec/cgi-bin/Manatee/GetManateeParameters.pm
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libexec/cgi-bin/Manatee/GetManateeTemplate.pm
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libexec/cgi-bin/Manatee/GetManateeURLs.pm
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libexec/cgi-bin/Manatee/MysqlEukManateeDB.pm
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libexec/cgi-bin/Manatee/MysqlProkManateeDB.pm
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libexec/cgi-bin/Manatee/Nuc_translator.pm
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libexec/cgi-bin/Manatee/ProkManateeDB.pm
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libexec/cgi-bin/Manatee/SybaseEukManateeDB.pm
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libexec/cgi-bin/Manatee/SybaseProkManateeDB.pm
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libexec/cgi-bin/Manatee/Yap.pm
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libexec/cgi-bin/RegionView.cgi
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libexec/cgi-bin/TE_creator.cgi
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libexec/cgi-bin/ViewFrameSeq.cgi
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libexec/cgi-bin/align_display.cgi
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libexec/cgi-bin/ann_tools.cgi
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libexec/cgi-bin/annotation_notebook.cgi
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libexec/cgi-bin/attribute_display.cgi
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libexec/cgi-bin/batch_assignments.cgi
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libexec/cgi-bin/bldScale.cgi
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libexec/cgi-bin/conf/Manatee.conf
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libexec/cgi-bin/conf/Manatee.conf.demo
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libexec/cgi-bin/conf/Manatee.conf.e2k1
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libexec/cgi-bin/conf/Manatee.conf.e2k1.ext
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libexec/cgi-bin/conf/Manatee.conf.ext
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libexec/cgi-bin/conf/Manatee.conf.install
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libexec/cgi-bin/conf/README
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libexec/cgi-bin/conf/RegionView.conf
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libexec/cgi-bin/consistency_checks.cgi
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libexec/cgi-bin/consistency_checks/AFSAPM_atttype.cgi
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libexec/cgi-bin/consistency_checks/CHP_CDP_DEG_gs_ec_notnull.cgi
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libexec/cgi-bin/consistency_checks/ORFS_go_role_link_not_ident.cgi
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libexec/cgi-bin/consistency_checks/ORFS_with_BOGUS_GO_IDs.cgi
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libexec/cgi-bin/consistency_checks/ORF_attrib_not_feat_score.cgi
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libexec/cgi-bin/consistency_checks/ORF_attribute_not_asm_feature.cgi
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libexec/cgi-bin/consistency_checks/ORFs_go_role_link_NOT_go_evidence.cgi
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libexec/cgi-bin/consistency_checks/ORFs_in_ident_NOT_go_role_link.cgi
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libexec/cgi-bin/consistency_checks/afsapm_AFSAPM.cgi
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libexec/cgi-bin/consistency_checks/asm_feat_not_ident.cgi
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libexec/cgi-bin/consistency_checks/asm_feat_rows_asmbl_id_not_in_assembly.cgi
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libexec/cgi-bin/consistency_checks/asm_feature_not_ORF_attribute.cgi
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libexec/cgi-bin/consistency_checks/asm_feature_not_evidence_not_hypo.cgi
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libexec/cgi-bin/consistency_checks/asm_feature_not_role_link_not_hypo.cgi
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libexec/cgi-bin/consistency_checks/att_types.cgi
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libexec/cgi-bin/consistency_checks/autoannotate_no_equivalog_hit.cgi
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libexec/cgi-bin/consistency_checks/bad_ident_locus_start.cgi
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libexec/cgi-bin/consistency_checks/consistency_checks.conf
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libexec/cgi-bin/consistency_checks/divide_3.cgi
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libexec/cgi-bin/consistency_checks/duplicate_gene_syms.cgi
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libexec/cgi-bin/consistency_checks/equivalogs_more_than_one_hit.cgi
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libexec/cgi-bin/consistency_checks/evidence_not_asm_feature.cgi
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libexec/cgi-bin/consistency_checks/evidence_not_feat_score.cgi
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libexec/cgi-bin/consistency_checks/family_protein_gene_sym_not_null.cgi
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libexec/cgi-bin/consistency_checks/feat_score_not_ORFattrib_evidence.cgi
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libexec/cgi-bin/consistency_checks/frame_shifts.cgi
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libexec/cgi-bin/consistency_checks/fs_align_display.cgi
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libexec/cgi-bin/consistency_checks/function_not_process.cgi
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libexec/cgi-bin/consistency_checks/gram_pos_com_name_periplasm.cgi
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libexec/cgi-bin/consistency_checks/gram_pos_incorrect_go_id.cgi
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libexec/cgi-bin/consistency_checks/hypothetical_proteins_in_GRL.cgi
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libexec/cgi-bin/consistency_checks/hypotheticals_with_bad_roles.cgi
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libexec/cgi-bin/consistency_checks/ident_locus_null.cgi
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libexec/cgi-bin/consistency_checks/ident_not_asm_feat.cgi
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libexec/cgi-bin/consistency_checks/lingering_FS_PM_com_names.cgi
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libexec/cgi-bin/consistency_checks/no_roles.cgi
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libexec/cgi-bin/consistency_checks/no_start_edit.cgi
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libexec/cgi-bin/consistency_checks/no_trans_stops.cgi
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libexec/cgi-bin/consistency_checks/non_microbial_roles.cgi
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libexec/cgi-bin/consistency_checks/noseq_asmfeat.cgi
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libexec/cgi-bin/consistency_checks/not_complete_post_fs_reports.cgi
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libexec/cgi-bin/consistency_checks/not_complete_pre_fs_report.cgi
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libexec/cgi-bin/consistency_checks/odd_starts.cgi
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libexec/cgi-bin/consistency_checks/odd_stops.cgi
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libexec/cgi-bin/consistency_checks/point_mutation.cgi
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libexec/cgi-bin/consistency_checks/process_not_function.cgi
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libexec/cgi-bin/consistency_checks/putative_gene_sym_ec_not_null.cgi
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libexec/cgi-bin/consistency_checks/readme
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libexec/cgi-bin/consistency_checks/role_link_not_in_asm_feature.cgi
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libexec/cgi-bin/consistency_checks/role_link_not_in_ident.cgi
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libexec/cgi-bin/consistency_checks/rows_go_evidence_not_go_role_link.cgi
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libexec/cgi-bin/consistency_checks/same_name_different_role.cgi
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libexec/cgi-bin/consistency_checks/screwy_idents.cgi
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libexec/cgi-bin/consistency_checks/six_caps_com_name.cgi
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libexec/cgi-bin/consistency_checks/test.cgi
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libexec/cgi-bin/consistency_checks/unknown_general_bad_roles.cgi
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libexec/cgi-bin/custom_blastreport.cgi
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libexec/cgi-bin/euk_display.cgi
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libexec/cgi-bin/evidence_display.cgi
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libexec/cgi-bin/frameshift/fs_create.cgi
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libexec/cgi-bin/frameshift/fs_list.cgi
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libexec/cgi-bin/frameshift/fs_report.cgi
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libexec/cgi-bin/frameshift/fs_short_list.cgi
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libexec/cgi-bin/frameshift/fs_verify.cgi
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libexec/cgi-bin/frameshift/labinfo_load.cgi
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libexec/cgi-bin/gen_sum.cgi
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libexec/cgi-bin/genelist_display.cgi
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libexec/cgi-bin/general_query.cgi
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libexec/cgi-bin/genome_summary.cgi
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libexec/cgi-bin/getParalogsSeq.cgi
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libexec/cgi-bin/help/contactBA.cgi
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libexec/cgi-bin/help/help.cgi
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libexec/cgi-bin/help/role_help.cgi
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libexec/cgi-bin/hmms.cgi
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libexec/cgi-bin/ir_report.cgi
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libexec/cgi-bin/js/orf_infopage.js
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libexec/cgi-bin/listchromosomes.cgi
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libexec/cgi-bin/listmolecules.cgi
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libexec/cgi-bin/membrane_prots.cgi
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libexec/cgi-bin/multiple_model_comparison_pic.cgi
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libexec/cgi-bin/overlap_display.cgi
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libexec/cgi-bin/parafamsbydomain.cgi
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libexec/cgi-bin/paralog_display.cgi
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libexec/cgi-bin/paralogs.cgi
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libexec/cgi-bin/paralogs/draw_percent_bar.cgi
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libexec/cgi-bin/paralogs/drawbar.cgi
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libexec/cgi-bin/paralogs/get_family.cgi
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libexec/cgi-bin/paralogs/show_ali.cgi
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libexec/cgi-bin/paralogs/show_all_families.cgi
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libexec/cgi-bin/paralogs/show_dom_cov.cgi
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libexec/cgi-bin/paralogs/show_domfam.cgi
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libexec/cgi-bin/paralogs/show_profam.cgi
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libexec/cgi-bin/project_status.cgi
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libexec/cgi-bin/psipred_viewer.cgi
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libexec/cgi-bin/refresh_searches.cgi
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libexec/cgi-bin/searchpage.cgi
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libexec/cgi-bin/shared/Coati/BulkHelper.pm
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libexec/cgi-bin/shared/Coati/BulkPostgresHelper.pm
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libexec/cgi-bin/shared/Coati/BulkSybaseHelper.pm
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libexec/cgi-bin/shared/Coati/Cache/Data.pm
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libexec/cgi-bin/shared/Coati/Coati.pm
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libexec/cgi-bin/shared/Coati/Coati/BulkPostgresChadoCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/BulkSybaseChadoCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/BulkSybaseOmniumCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/BulkSybaseProkCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/ChadoCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/CoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/CoatiXML.pm
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libexec/cgi-bin/shared/Coati/Coati/ERCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/EukCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/MysqlChadoCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/MysqlERCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/MysqlEukCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/MysqlOmniumCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/MysqlProkCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/MysqlSyntenyCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/OmniumCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/PostgresChadoCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/PostgresEukCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/PostgresOmniumCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/PostgresProkCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/ProkCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/SybaseChadoCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/SybaseERCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/SybaseEukCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/SybaseOmniumCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/SybaseProkCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/SybaseSyntenyCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/SyntenyCoatiDB.pm
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libexec/cgi-bin/shared/Coati/Coati/commonsql.xml
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libexec/cgi-bin/shared/Coati/Evidence.pm
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libexec/cgi-bin/shared/Coati/Evidence/EREvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/EukEvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/EvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/EvidenceXML.pm
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libexec/cgi-bin/shared/Coati/Evidence/MREvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/MysqlEREvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/MysqlEukEvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/MysqlMREvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/MysqlProkEvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/MysqlSyntenyEvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/ProkEvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/SybaseEREvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/SybaseEukEvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/SybaseMREvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/SybaseProkEvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/SybaseSyntenyEvidenceDB.pm
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libexec/cgi-bin/shared/Coati/Evidence/SyntenyEvidenceDB.pm
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libexec/cgi-bin/shared/Coati/GO_tree_storable.pm
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libexec/cgi-bin/shared/Coati/Logger.pm
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libexec/cgi-bin/shared/Coati/ModulesFactory.pm
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libexec/cgi-bin/shared/Coati/MysqlHelper.pm
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libexec/cgi-bin/shared/Coati/PostgresHelper.pm
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libexec/cgi-bin/shared/Coati/Sorters.pm
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libexec/cgi-bin/shared/Coati/SybaseHelper.pm
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libexec/cgi-bin/shared/Coati/TableIDManager.pm
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libexec/cgi-bin/shared/Coati/Test.pm
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libexec/cgi-bin/shared/Coati/Test/Html.pm
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libexec/cgi-bin/shared/Coati/Test/Mysql.pm
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libexec/cgi-bin/shared/Coati/Test/Sybase.pm
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libexec/cgi-bin/shared/Coati/Web/MyDataDumper.pm
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libexec/cgi-bin/shared/Coati/Web/Parameters.pm
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libexec/cgi-bin/shared/Coati/Web/Template.pm
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libexec/cgi-bin/shared/Coati/Web/URL.pm
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libexec/cgi-bin/shared/EvidencePicture.cgi
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libexec/cgi-bin/shared/GCDisplay.cgi
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libexec/cgi-bin/shared/GC_Skew_display.cgi
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libexec/cgi-bin/shared/Manatee.pm
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libexec/cgi-bin/shared/Manatee/Draw_seq_match_image.pm
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libexec/cgi-bin/shared/Manatee/GO_SLIM.pm
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libexec/cgi-bin/shared/Manatee/ManateeDB.pm
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libexec/cgi-bin/shared/Manatee/ManateeFactory.pm
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libexec/cgi-bin/shared/Manatee/Matchmatrix.pm
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libexec/cgi-bin/shared/Manatee/Sequence_coords_image.pm
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libexec/cgi-bin/shared/Manatee/Stacker.pm
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libexec/cgi-bin/shared/Manatee/Transposable_element_obj.pm
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libexec/cgi-bin/shared/ORF_infopage.cgi
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libexec/cgi-bin/shared/README
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libexec/cgi-bin/shared/addGOEvd.cgi
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libexec/cgi-bin/shared/btab_display.cgi
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libexec/cgi-bin/shared/clear_cache.cgi
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libexec/cgi-bin/shared/delete.cgi
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libexec/cgi-bin/shared/draw_seq_match_image.cgi
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libexec/cgi-bin/shared/edit_go_id.cgi
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libexec/cgi-bin/shared/gateway.cgi
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libexec/cgi-bin/shared/go_cgi/add_ontology_id.cgi
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libexec/cgi-bin/shared/go_cgi/create_ontology_link.cgi
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libexec/cgi-bin/shared/go_cgi/edit_ontology.cgi
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libexec/cgi-bin/shared/go_cgi/generate_ontology.cgi
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libexec/cgi-bin/shared/go_cgi/go_com_name_search.cgi
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libexec/cgi-bin/shared/go_cgi/go_correlations.cgi
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libexec/cgi-bin/shared/go_cgi/go_gene_display.cgi
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libexec/cgi-bin/shared/go_cgi/go_key_search.cgi
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libexec/cgi-bin/shared/go_cgi/go_keyword_search.cgi
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libexec/cgi-bin/shared/go_cgi/go_slim/delete_go_slim.pl
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libexec/cgi-bin/shared/go_cgi/go_slim/load_go_slim.pl
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libexec/cgi-bin/shared/go_cgi/replace_ti.cgi
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libexec/cgi-bin/shared/go_cgi/show_go_tree.cgi
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libexec/cgi-bin/shared/go_cgi/test_go_tree.cgi
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libexec/cgi-bin/shared/go_cgi/ti_status.cgi
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libexec/cgi-bin/shared/go_cgi/update_ontology_term.cgi
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libexec/cgi-bin/shared/graphic_library.cgi
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libexec/cgi-bin/shared/hmm_align_display.cgi
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libexec/cgi-bin/shared/hmm_inter_link.cgi
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libexec/cgi-bin/shared/hmm_orf_report.cgi
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libexec/cgi-bin/shared/hmm_report.cgi
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libexec/cgi-bin/shared/hmm_vs_all_db.cgi
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libexec/cgi-bin/shared/interpro_funcs.cgi
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libexec/cgi-bin/shared/iprs.cgi
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libexec/cgi-bin/shared/js/orf_infopage.js
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libexec/cgi-bin/shared/list_interpro.cgi
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libexec/cgi-bin/shared/listparafams.cgi
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libexec/cgi-bin/shared/login.cgi
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libexec/cgi-bin/shared/multi_align.cgi
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libexec/cgi-bin/shared/peffect_functions.cgi
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libexec/cgi-bin/shared/print_role_notes.cgi
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libexec/cgi-bin/shared/repeat_viewer.cgi
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libexec/cgi-bin/shared/role_info.cgi
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libexec/cgi-bin/shared/run_belvu.cgi
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libexec/cgi-bin/shared/seg_display.cgi
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libexec/cgi-bin/shared/seq_display.cgi
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libexec/cgi-bin/shared/show_all_hmms.cgi
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libexec/cgi-bin/shared/show_help.cgi
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libexec/cgi-bin/shared/show_history.cgi
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libexec/cgi-bin/shared/show_png.cgi
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libexec/cgi-bin/shared/sigp_display.cgi
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libexec/cgi-bin/shared/spawn_help.cgi
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libexec/cgi-bin/shared/submit_feats.cgi
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libexec/cgi-bin/shared/templates/btab_display.tt
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libexec/cgi-bin/shared/templates/characterized.tt
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libexec/cgi-bin/shared/templates/docs/ORFinfo_page_help.html
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libexec/cgi-bin/shared/templates/docs/btab_display.html
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libexec/cgi-bin/shared/templates/docs/btab_display.txt
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libexec/cgi-bin/shared/templates/docs/gc_skew_display.html
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libexec/cgi-bin/shared/templates/docs/gc_skew_display.txt
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libexec/cgi-bin/shared/templates/docs/gcdisplay.html
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libexec/cgi-bin/shared/templates/docs/gcdisplay.txt
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libexec/cgi-bin/shared/templates/docs/general_error_page.txt
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libexec/cgi-bin/shared/templates/docs/go_com_name_search.html
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libexec/cgi-bin/shared/templates/docs/go_com_name_search.txt
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libexec/cgi-bin/shared/templates/docs/go_correlations.html
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libexec/cgi-bin/shared/templates/docs/go_correlations.txt
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libexec/cgi-bin/shared/templates/docs/go_gene_display.html
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libexec/cgi-bin/shared/templates/docs/go_gene_display.txt
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libexec/cgi-bin/shared/templates/docs/go_key_search.html
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libexec/cgi-bin/shared/templates/docs/go_key_search.txt
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libexec/cgi-bin/shared/templates/docs/go_keyword_search.html
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libexec/cgi-bin/shared/templates/docs/go_keyword_search.txt
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libexec/cgi-bin/shared/templates/docs/go_tree.html
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libexec/cgi-bin/shared/templates/docs/go_tree.txt
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libexec/cgi-bin/shared/templates/docs/hmm_align_display.html
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libexec/cgi-bin/shared/templates/docs/hmm_align_display.txt
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libexec/cgi-bin/shared/templates/docs/hmm_inter_link.html
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libexec/cgi-bin/shared/templates/docs/hmm_inter_link.txt
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libexec/cgi-bin/shared/templates/docs/hmm_orf_report.html
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libexec/cgi-bin/shared/templates/docs/hmm_orf_report.txt
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libexec/cgi-bin/shared/templates/docs/hmm_report.html
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libexec/cgi-bin/shared/templates/docs/hmm_report.txt
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libexec/cgi-bin/shared/templates/docs/hmm_vs_all_db.html
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libexec/cgi-bin/shared/templates/docs/hmm_vs_all_db.txt
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libexec/cgi-bin/shared/templates/docs/invalid_orf_error_page.txt
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libexec/cgi-bin/shared/templates/docs/iprs.html
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libexec/cgi-bin/shared/templates/docs/iprs.txt
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libexec/cgi-bin/shared/templates/docs/list_interpro.html
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libexec/cgi-bin/shared/templates/docs/list_interpro.txt
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libexec/cgi-bin/trees/TreeDrawer.pm
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libexec/cgi-bin/trees/TreeParse.pm
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libexec/cgi-bin/trees/showTree.cgi
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libexec/cgi-bin/trees/utility/alignmentToTree.cgi
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libexec/cgi-bin/urls/urls_euk_internal.xml
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