51 lines
1.7 KiB
Makefile
51 lines
1.7 KiB
Makefile
# $NetBSD$
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#
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###########################################################
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# Generated by fbsd2pkg #
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###########################################################
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# TransDecoder.LongOrfs suggests doing Pfam or BlastP searches?
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# p5-URI-ESC?
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# FIXME: Check use statements in all perl scripts for more deps
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DISTNAME= p5-transdecoder-${PV}
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_GITHUB:=TransDecoder/}
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GITHUB_PROJECT= TransDecoder
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GITHUB_TAG= TransDecoder-v${PV}
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= https://transdecoder.github.io/
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COMMENT= Identify candidate coding regions within transcript sequences
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LICENSE= modified-bsd
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SUBST_CLASSES+= path
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SUBST_STAGE.path= post-patch
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SUBST_SED.path+= -e 's|$$FindBin::RealBin/PerlLib|${PREFIX}/lib/TransDecoder/PerlLib|g'
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SUBST_SED.path+= -e 's|$$FindBin::Bin/../PerlLib|${PREFIX}/lib/TransDecoder/PerlLib|g'
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SUBST_SED.path+= -e 's|$$FindBin::RealBin/util|${PREFIX}/libexec/TransDecoder/util|g'
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SUBST_FILES.path+= ${WRKSRC}/TransDecoder*
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SUBST_FILES.path+= ${WRKSRC}/util/*.pl
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DEPENDS= cdhit>=4.6.8:../../wip/cdhit \
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p5-URI>=0:../../www/p5-URI
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USE_TOOLS= perl
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REPLACE_BASH= sample_data/runMe.sh util/pfam_mpi.pbs
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REPLACE_PERL= util/*.pl sample_data/*.pl PerlLib/*.pm PerlLib/*.ph \
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TransDecoder.LongOrfs TransDecoder.Predict
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NO_BUILD= yes
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PV= 5.3.0
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INSTALLATION_DIRS= bin lib/TransDecoder/PerlLib libexec/TransDecoder/util
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do-install:
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${INSTALL_SCRIPT} ${WRKSRC}/PerlLib/* \
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${DESTDIR}${PREFIX}/lib/TransDecoder/PerlLib
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${INSTALL_SCRIPT} ${WRKSRC}/TransDecoder.LongOrfs ${WRKSRC}/TransDecoder.Predict ${DESTDIR}${PREFIX}/bin
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${INSTALL_SCRIPT} ${WRKSRC}/util/*.pl \
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${DESTDIR}${PREFIX}/libexec/TransDecoder/util
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.include "../../mk/bsd.pkg.mk"
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