41 lines
1.1 KiB
Makefile
41 lines
1.1 KiB
Makefile
# $NetBSD$
|
|
#
|
|
###########################################################
|
|
# Generated by fbsd2pkg #
|
|
# Thu Mar 3 09:54:03 CST 2016 #
|
|
###########################################################
|
|
|
|
DISTNAME= tophat-${PORTVERSION}
|
|
CATEGORIES= biology
|
|
# Note: Distfiles on Github are not the same as those here
|
|
MASTER_SITES= http://ccb.jhu.edu/software/tophat/downloads/
|
|
|
|
MAINTAINER= bacon@NetBSD.org
|
|
HOMEPAGE= http://ccb.jhu.edu/software/tophat/index.shtml
|
|
COMMENT= Fast splice junction mapper for RNA-Seq reads
|
|
LICENSE= boost-license
|
|
|
|
MAKE_JOBS_SAFE= no
|
|
|
|
DEPENDS+= bowtie2>=0:../../wip/bowtie2
|
|
|
|
USE_LANGUAGES= c c++
|
|
USE_TOOLS+= gmake
|
|
GNU_CONFIGURE= yes
|
|
|
|
REPLACE_PYTHON= src/bed_to_juncs
|
|
REPLACE_PYTHON= src/contig_to_chr_coords
|
|
REPLACE_PYTHON= src/sra_to_solid
|
|
REPLACE_PYTHON= src/tophat-fusion-post
|
|
REPLACE_PYTHON= src/tophat.py
|
|
REPLACE_BASH= src/tophat2.sh
|
|
|
|
CFLAGS+= -Wno-unused
|
|
|
|
PORTVERSION= 2.1.1
|
|
|
|
.include "../../devel/zlib/buildlink3.mk"
|
|
.include "../../lang/python/application.mk"
|
|
.include "../../devel/boost-libs/buildlink3.mk"
|
|
.include "../../mk/bsd.pkg.mk"
|