63 lines
1.9 KiB
Makefile
63 lines
1.9 KiB
Makefile
# $NetBSD$
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#
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###########################################################
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# Generated by fbsd2pkg #
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# Sat Nov 10 09:59:07 CST 2018 #
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###########################################################
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###########################################################
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# Unconverted and partially converted FreeBSD port syntax:
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# TEST_DEPENDS= bash:shells/bash
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# Unknown tool: USE_TOOLS= localbase
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#USE_LDCONFIG= ${PREFIX}/libexec/${PORTNAME}
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DISTNAME= bcftools-${PV}
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/}
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GITHUB_PROJECT= bcftools
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GITHUB_TAG= ${PV}
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= https://www.htslib.org/
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COMMENT= Tools for manipulating BCF (binary VCF) sequence files
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LICENSE= mit
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REPLACE_PERL= misc/*.pl misc/plot-vcfstats test/test.pl
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REPLACE_PYTHON= misc/*.py
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SUBST_CLASSES+= version
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SUBST_STAGE.version= pre-configure
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SUBST_SED.version+= -e 's|@PORTVERSION@|${PV}|g'
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SUBST_FILES.version+= ${WRKSRC}/configure.ac
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USE_LANGUAGES= c c++
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USE_TOOLS+= autoconf automake autoreconf gmake perl
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GNU_CONFIGURE= yes
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MAKE_ENV+= USE_GPL=1
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PV= 1.9
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pre-configure:
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cd ${WRKSRC} && autoreconf -if
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post-install:
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${MV} ${DESTDIR}${PREFIX}/bin/samtools_misc/color-chrs.pl \
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${DESTDIR}${PREFIX}/bin/color-chrs
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${MV} ${DESTDIR}${PREFIX}/bin/samtools_misc/guess-ploidy.py\
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${DESTDIR}${PREFIX}/bin/guess-ploidy
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${MV} /${DESTDIR}${PREFIX}/bin/samtools_misc/plot-roh.py \
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${DESTDIR}${PREFIX}/bin/plot-roh
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${MV} ${DESTDIR}${PREFIX}/bin/samtools_misc/run-roh.pl \
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${DESTDIR}${PREFIX}/bin/run-roh
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${MV} ${DESTDIR}${PREFIX}/bin/samtools_misc/vcfutils.pl \
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${DESTDIR}${PREFIX}/bin/vcfutils
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${MV} ${DESTDIR}${PREFIX}/bin/samtools_misc/plot-vcfstats \
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${DESTDIR}${PREFIX}/bin/
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${RMDIR} ${DESTDIR}${PREFIX}/bin/samtools_misc/
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.include "../../biology/htslib/buildlink3.mk"
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.include "../../devel/zlib/buildlink3.mk"
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.include "../../lang/python/application.mk"
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.include "../../mk/bsd.pkg.mk"
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