71 lines
2.7 KiB
Makefile
71 lines
2.7 KiB
Makefile
# $NetBSD: Makefile,v 1.11 2019/08/11 13:18:00 wiz Exp $
|
|
|
|
DISTNAME= ncbi-blast-2.8.1+-src
|
|
PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/}
|
|
PKGREVISION= 5
|
|
CATEGORIES= biology
|
|
MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
|
|
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/
|
|
|
|
MAINTAINER= bacon@NetBSD.org
|
|
HOMEPAGE= http://blast.ncbi.nlm.nih.gov/
|
|
COMMENT= NCBI implementation of Basic Local Alignment Search Tool
|
|
LICENSE= public-domain
|
|
|
|
# Fix "undefined _ThreadRuneLocale" error on FreeBSD 10.0
|
|
# Fix "unknown options" in configure
|
|
SUBST_CLASSES+= configure
|
|
SUBST_STAGE.configure= pre-configure
|
|
SUBST_SED.configure+= -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|'
|
|
SUBST_SED.configure+= -e '/--infodir=DIR/d'
|
|
SUBST_SED.configure+= -e '/--mandir=DIR/d'
|
|
SUBST_FILES.configure+= ${WRKSRC}/src/build-system/configure
|
|
|
|
USE_TOOLS+= bash gmake perl
|
|
USE_LANGUAGES= c c++
|
|
GNU_CONFIGURE= yes
|
|
GNU_CONFIGURE_STRICT= no # doesn't know --enable-option-checking
|
|
REPLACE_BASH= scripts/common/impl/define_random_macros.sh
|
|
REPLACE_BASH+= src/app/blast/get_species_taxids.sh
|
|
REPLACE_PERL= src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl
|
|
REPLACE_PYTHON= src/app/winmasker/windowmasker_2.2.22_adapter.py
|
|
|
|
# The test for amq can hang, but amq is not needed so just avoid the test
|
|
# configure chooses /usr/local/bin/ar with no flags
|
|
# Resolve a conflict with libproj by moving libs to a subdir
|
|
CONFIGURE_ENV= ncbi_cv_prog_amq_w=no
|
|
CONFIGURE_ARGS+= AR="ar cr" --without-boost
|
|
CONFIGURE_ARGS+= --libdir=${PREFIX}/lib/ncbi-tools++
|
|
WRKSRC= ${WRKDIR}/${DISTNAME}/c++
|
|
|
|
.include "../../mk/bsd.prefs.mk"
|
|
|
|
.if ${OPSYS} == NetBSD
|
|
# statfs is deprecated on NetBSD, but still exists in libc
|
|
# configure checks only for undefined reference, not for usability
|
|
CONFIGURE_ENV+= ac_cv_func_statfs=no
|
|
.endif
|
|
|
|
post-install:
|
|
${RM} ${DESTDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra
|
|
.if ${OPSYS} != Darwin
|
|
${STRIP} ${DESTDIR}${PREFIX}/lib/ncbi-tools++/*.so
|
|
.endif
|
|
|
|
.include "../../devel/zlib/buildlink3.mk"
|
|
.include "../../archivers/lzo/buildlink3.mk"
|
|
.include "../../archivers/bzip2/buildlink3.mk"
|
|
.include "../../devel/pcre/buildlink3.mk"
|
|
.include "../../databases/lmdb/buildlink3.mk"
|
|
.include "../../security/gnutls/buildlink3.mk"
|
|
.include "../../devel/gmp/buildlink3.mk"
|
|
.include "../../devel/libidn2/buildlink3.mk"
|
|
.include "../../security/nettle/buildlink3.mk"
|
|
.include "../../security/libtasn1/buildlink3.mk"
|
|
.include "../../security/p11-kit/buildlink3.mk"
|
|
.include "../../security/libgcrypt/buildlink3.mk"
|
|
.include "../../databases/sqlite3/buildlink3.mk"
|
|
.include "../../security/libgpg-error/buildlink3.mk"
|
|
.include "../../lang/python/application.mk"
|
|
.include "../../mk/bsd.pkg.mk"
|