41 lines
1.1 KiB
Makefile
41 lines
1.1 KiB
Makefile
# $NetBSD$
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#
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###########################################################
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# Generated by fbsd2pkg #
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# Thu Mar 3 09:54:03 CST 2016 #
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###########################################################
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DISTNAME= tophat-${PORTVERSION}
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CATEGORIES= biology
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# Note: Distfiles on Github are not the same as those here
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MASTER_SITES= http://ccb.jhu.edu/software/tophat/downloads/
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= https://ccb.jhu.edu/software/tophat/index.shtml
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COMMENT= Fast splice junction mapper for RNA-Seq reads
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LICENSE= boost-license
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MAKE_JOBS_SAFE= no
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DEPENDS+= bowtie2>=0:../../wip/bowtie2
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USE_LANGUAGES= c c++
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USE_TOOLS+= gmake
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GNU_CONFIGURE= yes
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REPLACE_PYTHON= src/bed_to_juncs
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REPLACE_PYTHON= src/contig_to_chr_coords
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REPLACE_PYTHON= src/sra_to_solid
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REPLACE_PYTHON= src/tophat-fusion-post
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REPLACE_PYTHON= src/tophat.py
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REPLACE_BASH= src/tophat2.sh
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CFLAGS+= -Wno-unused
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PORTVERSION= 2.1.1
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.include "../../devel/zlib/buildlink3.mk"
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.include "../../lang/python/application.mk"
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.include "../../devel/boost-libs/buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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