51 lines
1.4 KiB
Makefile
51 lines
1.4 KiB
Makefile
# $NetBSD$
|
|
#
|
|
###########################################################
|
|
# Generated by fbsd2pkg #
|
|
# Wed Mar 2 08:06:07 CST 2016 #
|
|
###########################################################
|
|
|
|
DISTNAME= bowtie2-${PV}
|
|
CATEGORIES= biology
|
|
MASTER_SITES= ${MASTER_SITE_GITHUB:=BenLangmead/}
|
|
GITHUB_PROJECT= bowtie2
|
|
GITHUB_TAG= v${PV}
|
|
|
|
MAINTAINER= bacon@NetBSD.org
|
|
HOMEPAGE= https://bowtie-bio.sourceforge.net/index.shtml
|
|
COMMENT= Ultrafast, memory-efficient short read aligner
|
|
LICENSE= artistic
|
|
|
|
USE_LANGUAGES= c c++
|
|
USE_TOOLS+= gmake perl:run pax
|
|
REPLACE_PERL= scripts/*.pl bowtie2
|
|
REPLACE_PYTHON= bowtie2-build bowtie2-inspect
|
|
|
|
PV= 2.3.4.2
|
|
DATADIR= ${PREFIX}/share/bowtie2
|
|
DOCSDIR= ${PREFIX}/share/doc/bowtie2
|
|
EXAMPLESDIR= ${PREFIX}/share/examples/bowtie2
|
|
|
|
INSTALLATION_DIRS= share/bowtie2/scripts
|
|
|
|
post-install:
|
|
${INSTALL_PROGRAM} \
|
|
${WRKSRC}/bowtie2*-s \
|
|
${WRKSRC}/bowtie2*-l \
|
|
${DESTDIR}${PREFIX}/bin
|
|
${INSTALL_SCRIPT} \
|
|
${WRKSRC}/scripts/*.sh \
|
|
${WRKSRC}/scripts/*.pl \
|
|
${DESTDIR}${DATADIR}/scripts
|
|
${INSTALL_SCRIPT} \
|
|
${FILESDIR}/bowtie2-manual \
|
|
${DESTDIR}${PREFIX}/bin
|
|
cd ${WRKSRC}/example && pax -rw index reads reference \
|
|
${DESTDIR}${EXAMPLESDIR}
|
|
cd ${WRKSRC}/doc && pax -rw * ${DESTDIR}${DOCSDIR}
|
|
|
|
.include "../../lang/python/application.mk"
|
|
.include "../../wip/tbb/buildlink3.mk"
|
|
.include "../../devel/zlib/buildlink3.mk"
|
|
.include "../../mk/bsd.pkg.mk"
|