57 lines
1.8 KiB
Makefile
57 lines
1.8 KiB
Makefile
# $NetBSD$
|
|
#
|
|
###########################################################
|
|
# Generated by fbsd2pkg #
|
|
# Wed Sep 20 05:34:25 CDT 2017 #
|
|
###########################################################
|
|
|
|
PKGNAME= bolt-lmm-2.3.2
|
|
DISTNAME= BOLT-LMM_v${PKGVERSION_NOREV}
|
|
PKGREVISION= 1
|
|
CATEGORIES= biology
|
|
MASTER_SITES= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/ \
|
|
https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/old/
|
|
|
|
MAINTAINER= bacon@NetBSD.org
|
|
HOMEPAGE= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/
|
|
COMMENT= Statistics for testing association between phenotype and genotypes
|
|
LICENSE= gnu-gpl-v3
|
|
|
|
USE_LANGUAGES= c c++ fortran
|
|
USE_TOOLS+= gmake pax
|
|
|
|
MAKE_FILE= ${FILESDIR}/Makefile
|
|
MAKE_ENV+= LAPACK_LIBS="${LAPACK_LIBS}"
|
|
CXXFLAGS+= -fopenmp
|
|
|
|
DATADIR= share/bolt-lmm
|
|
EXAMPLESDIR= share/examples/bolt-lmm
|
|
|
|
INSTALLATION_DIRS= bin ${DATADIR} ${EXAMPLESDIR}
|
|
|
|
SUBST_CLASSES+= data
|
|
SUBST_STAGE.data= pre-configure
|
|
SUBST_FILES.data= src/BoltParams.cpp
|
|
SUBST_SED.data= -e 's|tables/|${PREFIX}/${DATADIR}/tables|g'
|
|
|
|
SUBST_CLASSES+= example
|
|
SUBST_STAGE.example= pre-configure
|
|
SUBST_FILES.example= example/run_example.sh
|
|
SUBST_SED.example= -e 's|../tables/|${PREFIX}/${DATADIR}/tables/|g'
|
|
|
|
post-patch:
|
|
${RM} ${WRKSRC}/example/*.orig ${WRKSRC}/bolt
|
|
|
|
do-install:
|
|
${INSTALL_PROGRAM} ${WRKSRC}/src/bolt ${DESTDIR}${PREFIX}/bin
|
|
cd ${WRKSRC} && pax -rw tables ${DESTDIR}${PREFIX}/${DATADIR}
|
|
cd ${WRKSRC}/example && pax -rw * ${DESTDIR}${PREFIX}/${EXAMPLESDIR}
|
|
${CHMOD} a+x ${DESTDIR}${PREFIX}/${EXAMPLESDIR}/*.sh
|
|
${CHMOD} g-w ${DESTDIR}${PREFIX}/${EXAMPLESDIR}/*
|
|
|
|
.include "../../wip/mk/blas.buildlink3.mk"
|
|
.include "../../math/nlopt/buildlink3.mk"
|
|
.include "../../devel/boost-libs/buildlink3.mk"
|
|
.include "../../devel/zlib/buildlink3.mk"
|
|
.include "../../mk/bsd.pkg.mk"
|