78 lines
2.7 KiB
Makefile
78 lines
2.7 KiB
Makefile
# $NetBSD$
|
|
#
|
|
###########################################################
|
|
# Generated by fbsd2pkg #
|
|
# Mon Nov 5 13:17:05 CST 2018 #
|
|
###########################################################
|
|
|
|
###########################################################
|
|
# Unconverted and partially converted FreeBSD port syntax:
|
|
|
|
# 3rd-party: http://merenlab.org/2016/06/18/installing-third-party-software/
|
|
# Need: modeller
|
|
|
|
DISTNAME= anvio-${PV}
|
|
PKGNAME= ${PYPKGPREFIX}-anvio-${PV}
|
|
CATEGORIES= python
|
|
MASTER_SITES= ${MASTER_SITE_GITHUB:=merenlab/}
|
|
GITHUB_PROJECT= anvio
|
|
GITHUB_TAG= v${PV}
|
|
|
|
MAINTAINER= bacon@NetBSD.org
|
|
HOMEPAGE= https://merenlab.org/software/anvio/
|
|
COMMENT= Analysis and visualization platform for 'omics data
|
|
LICENSE= gnu-gpl-v3
|
|
|
|
DEPENDS= samtools>0:../../wip/samtools \
|
|
hmmer>0:../../wip/hmmer \
|
|
FastTree>0:../../wip/fasttree \
|
|
muscle>0:../../wip/muscle \
|
|
R>0:../../math/R \
|
|
R-gridExtra>0:../../graphics/R-gridExtra \
|
|
R-ggplot2>0:../../graphics/R-ggplot2 \
|
|
R-gtools>0:../../math/R-gtools \
|
|
${PYPKGPREFIX}-mistune>0:../../textproc/py-mistune \
|
|
${PYPKGPREFIX}-pandas>0:../../math/py-pandas \
|
|
${PYPKGPREFIX}-django>0:../../www/py-django \
|
|
${PYPKGPREFIX}-requests>0:../../devel/py-requests \
|
|
${PYPKGPREFIX}-bottle>0:../../www/py-bottle \
|
|
${PYPKGPREFIX}-psutil>0:../../sysutils/py-psutil \
|
|
${PYPKGPREFIX}-scikit-learn>0:../../math/py-scikit-learn \
|
|
${PYPKGPREFIX}-h5py>0:../../devel/py-h5py \
|
|
${PYPKGPREFIX}-biopython>0:../../wip/py-biopython \
|
|
${PYPKGPREFIX}-biopython>0:../../wip/py-biopython \
|
|
Prodigal>0:../../wip/prodigal \
|
|
centrifuge>0:../../wip/centrifuge \
|
|
mcl>0:../../wip/mcl \
|
|
xssp>0:../../wip/xssp \
|
|
FAMSA>0:../../wip/famsa \
|
|
R-optparse>0:../../wip/R-optparse \
|
|
${PYPKGPREFIX}-pysam>0:../../wip/py-pysam \
|
|
${PYPKGPREFIX}-ete3>0:../../wip/py-ete3 \
|
|
${PYPKGPREFIX}-eggnog-mapper>0:../../wip/py-eggnog-mapper \
|
|
${PYPKGPREFIX}-snakemake>0:../../wip/py-snakemake
|
|
|
|
USE_TOOLS= bash
|
|
REPLACE_BASH= anvio/workflows/metagenomics/test/*.sh tests/*.sh tests/*/*.sh
|
|
REPLACE_BASH+= sandbox/anvi-script-FASTA-to-contigs-db sandbox/*.sh
|
|
REPLACE_PYTHON= tests/server/run_server_tests.py
|
|
|
|
REPLACE_R= sandbox/anvi-script-gen_stats_for_single_copy_genes.R
|
|
|
|
REPLACE_INTERPRETER+= R
|
|
REPLACE.R.old= /usr/bin/env Rscript
|
|
REPLACE.R.new= ${PREFIX}/bin/R
|
|
REPLACE_FILES.R= ${REPLACE_R}
|
|
|
|
PYTHON_VERSIONS_INCOMPATIBLE= 27
|
|
|
|
PV= 5.2
|
|
|
|
.include "../../lang/python/egg.mk"
|
|
.include "../../lang/python/application.mk"
|
|
.include "../../math/gsl/buildlink3.mk"
|
|
.include "../../devel/hdf5/buildlink3.mk"
|
|
.include "../../databases/sqlite/buildlink3.mk"
|
|
.include "../../math/py-numpy/buildlink3.mk"
|
|
.include "../../mk/bsd.pkg.mk"
|