64 lines
2.2 KiB
Makefile
64 lines
2.2 KiB
Makefile
# $NetBSD$
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###########################################################
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# Generated by fbsd2pkg #
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###########################################################
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DISTNAME= samtools-${PORTVERSION}
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PKGNAME= samtools0119-${PORTVERSION}
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=samtools/}
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EXTRACT_SUFX= .tar.bz2
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MAINTAINER= bacon@NetBSD.org
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PORTVERSION= 0.1.19
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COMMENT= Generic format for storing large nucleotide sequence alignments
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LICENSE= mit
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USE_TOOLS+= gmake perl
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USE_ZLIB= yes
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REPLACE_PERL= misc/export2sam.pl misc/plot-bamcheck
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REPLACE_PYTHON= misc/varfilter.py
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# No REPLACE_LUAJIT available at this time
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SUBST_CLASSES+= luajit
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SUBST_STAGE.luajit= post-patch
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SUBST_SED.luajit= -e 's|/usr/bin/env luajit|${PREFIX}/bin/luajit|g'
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SUBST_FILES.luajit= misc/r2plot.lua misc/vcfutils.lua
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LDFLAGS+= ${COMPILER_RPATH_FLAG}${PREFIX}/lib
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SAMPREFIX= ${PREFIX}/samtools0119
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do-build:
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cd ${WRKSRC} && ${MAKE_PROGRAM} LDFLAGS="${LDFLAGS}" all-recur razip
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do-install:
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${MKDIR} ${DESTDIR}${SAMPREFIX}/bin
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${INSTALL_PROGRAM} ${WRKSRC}/samtools ${DESTDIR}${SAMPREFIX}/bin
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${INSTALL_PROGRAM} ${WRKSRC}/razip ${DESTDIR}${SAMPREFIX}/bin
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${INSTALL_PROGRAM} ${WRKSRC}/bcftools/bcftools ${DESTDIR}${SAMPREFIX}/bin
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.for f in ace2sam bamcheck maq2sam-long maq2sam-short md5fa md5sum-lite wgsim
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${INSTALL_PROGRAM} ${WRKSRC}/misc/${f} ${DESTDIR}${SAMPREFIX}/bin
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.endfor
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${INSTALL_SCRIPT} ${WRKSRC}/misc/*.pl ${WRKSRC}/misc/plot-bamcheck \
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${DESTDIR}${SAMPREFIX}/bin
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${INSTALL_SCRIPT} ${WRKSRC}/misc/*.py ${DESTDIR}${SAMPREFIX}/bin
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${INSTALL_SCRIPT} ${WRKSRC}/misc/*.lua ${DESTDIR}${SAMPREFIX}/bin
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${MKDIR} ${DESTDIR}${SAMPREFIX}/lib
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${INSTALL_DATA} ${WRKSRC}/libbam.a ${DESTDIR}${SAMPREFIX}/lib
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${MKDIR} ${DESTDIR}${SAMPREFIX}/man/man1
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${INSTALL_MAN} ${WRKSRC}/samtools.1 ${DESTDIR}${SAMPREFIX}/man/man1
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${MKDIR} ${DESTDIR}${SAMPREFIX}/include/bam
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${INSTALL_DATA} ${WRKSRC}/*.h ${DESTDIR}${SAMPREFIX}/include/bam
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.include "../../lang/python/application.mk"
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.include "../../lang/lua/application.mk"
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.include "../../lang/LuaJIT2/buildlink3.mk"
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.include "../../devel/zlib/buildlink3.mk"
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.include "../../devel/ncurses/buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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