570 lines
25 KiB
Plaintext
570 lines
25 KiB
Plaintext
@comment $NetBSD$
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bin/mdconvert
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bin/mdinspect
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${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
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${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
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${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
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${PYSITELIB}/${EGG_INFODIR}/entry_points.txt
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${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
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${PYSITELIB}/${EGG_INFODIR}/top_level.txt
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${PYSITELIB}/mdtraj/__init__.py
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${PYSITELIB}/mdtraj/__init__.pyc
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${PYSITELIB}/mdtraj/__init__.pyo
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${PYSITELIB}/mdtraj/_lprmsd.so
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${PYSITELIB}/mdtraj/_rmsd.so
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${PYSITELIB}/mdtraj/core/__init__.py
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${PYSITELIB}/mdtraj/core/__init__.pyc
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${PYSITELIB}/mdtraj/core/__init__.pyo
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${PYSITELIB}/mdtraj/core/element.py
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${PYSITELIB}/mdtraj/core/element.pyc
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${PYSITELIB}/mdtraj/core/element.pyo
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${PYSITELIB}/mdtraj/core/lib/center.h
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${PYSITELIB}/mdtraj/core/lib/libtheobald.a
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${PYSITELIB}/mdtraj/core/lib/theobald_rmsd.h
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${PYSITELIB}/mdtraj/core/residue_names.py
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${PYSITELIB}/mdtraj/core/residue_names.pyc
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${PYSITELIB}/mdtraj/core/residue_names.pyo
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${PYSITELIB}/mdtraj/core/selection.py
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${PYSITELIB}/mdtraj/core/selection.pyc
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${PYSITELIB}/mdtraj/core/selection.pyo
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${PYSITELIB}/mdtraj/core/topology.py
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${PYSITELIB}/mdtraj/core/topology.pyc
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${PYSITELIB}/mdtraj/core/topology.pyo
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${PYSITELIB}/mdtraj/core/trajectory.py
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${PYSITELIB}/mdtraj/core/trajectory.pyc
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${PYSITELIB}/mdtraj/core/trajectory.pyo
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${PYSITELIB}/mdtraj/formats/__init__.py
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${PYSITELIB}/mdtraj/formats/__init__.pyc
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${PYSITELIB}/mdtraj/formats/__init__.pyo
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${PYSITELIB}/mdtraj/formats/amberrst.py
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${PYSITELIB}/mdtraj/formats/amberrst.pyc
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${PYSITELIB}/mdtraj/formats/amberrst.pyo
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${PYSITELIB}/mdtraj/formats/arc.py
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${PYSITELIB}/mdtraj/formats/arc.pyc
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${PYSITELIB}/mdtraj/formats/arc.pyo
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${PYSITELIB}/mdtraj/formats/binpos.so
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${PYSITELIB}/mdtraj/formats/dcd.so
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${PYSITELIB}/mdtraj/formats/dtr.so
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${PYSITELIB}/mdtraj/formats/gro.py
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${PYSITELIB}/mdtraj/formats/gro.pyc
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${PYSITELIB}/mdtraj/formats/gro.pyo
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${PYSITELIB}/mdtraj/formats/hdf5.py
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${PYSITELIB}/mdtraj/formats/hdf5.pyc
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${PYSITELIB}/mdtraj/formats/hdf5.pyo
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${PYSITELIB}/mdtraj/formats/hoomdxml.py
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${PYSITELIB}/mdtraj/formats/hoomdxml.pyc
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${PYSITELIB}/mdtraj/formats/hoomdxml.pyo
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${PYSITELIB}/mdtraj/formats/lammpstrj.py
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${PYSITELIB}/mdtraj/formats/lammpstrj.pyc
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${PYSITELIB}/mdtraj/formats/lammpstrj.pyo
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${PYSITELIB}/mdtraj/formats/lh5.py
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${PYSITELIB}/mdtraj/formats/lh5.pyc
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${PYSITELIB}/mdtraj/formats/lh5.pyo
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${PYSITELIB}/mdtraj/formats/mdcrd.py
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${PYSITELIB}/mdtraj/formats/mdcrd.pyc
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${PYSITELIB}/mdtraj/formats/mdcrd.pyo
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${PYSITELIB}/mdtraj/formats/mol2.py
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${PYSITELIB}/mdtraj/formats/mol2.pyc
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${PYSITELIB}/mdtraj/formats/mol2.pyo
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${PYSITELIB}/mdtraj/formats/netcdf.py
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${PYSITELIB}/mdtraj/formats/netcdf.pyc
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${PYSITELIB}/mdtraj/formats/netcdf.pyo
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${PYSITELIB}/mdtraj/formats/openmmxml.py
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${PYSITELIB}/mdtraj/formats/openmmxml.pyc
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${PYSITELIB}/mdtraj/formats/openmmxml.pyo
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${PYSITELIB}/mdtraj/formats/pdb/__init__.py
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${PYSITELIB}/mdtraj/formats/pdb/__init__.pyc
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${PYSITELIB}/mdtraj/formats/pdb/__init__.pyo
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${PYSITELIB}/mdtraj/formats/pdb/data/pdbNames.xml
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${PYSITELIB}/mdtraj/formats/pdb/data/residues.xml
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${PYSITELIB}/mdtraj/formats/pdb/pdbfile.py
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${PYSITELIB}/mdtraj/formats/pdb/pdbfile.pyc
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${PYSITELIB}/mdtraj/formats/pdb/pdbfile.pyo
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${PYSITELIB}/mdtraj/formats/pdb/pdbstructure.py
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${PYSITELIB}/mdtraj/formats/pdb/pdbstructure.pyc
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${PYSITELIB}/mdtraj/formats/pdb/pdbstructure.pyo
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${PYSITELIB}/mdtraj/formats/pdb/tests/__init__.py
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${PYSITELIB}/mdtraj/formats/pdb/tests/__init__.pyc
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${PYSITELIB}/mdtraj/formats/pdb/tests/__init__.pyo
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${PYSITELIB}/mdtraj/formats/pdb/tests/test_element.py
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${PYSITELIB}/mdtraj/formats/pdb/tests/test_element.pyc
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${PYSITELIB}/mdtraj/formats/pdb/tests/test_element.pyo
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${PYSITELIB}/mdtraj/formats/pdb/tests/test_pdb.py
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${PYSITELIB}/mdtraj/formats/pdb/tests/test_pdb.pyc
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${PYSITELIB}/mdtraj/formats/pdb/tests/test_pdb.pyo
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${PYSITELIB}/mdtraj/formats/prmtop.py
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${PYSITELIB}/mdtraj/formats/prmtop.pyc
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${PYSITELIB}/mdtraj/formats/prmtop.pyo
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${PYSITELIB}/mdtraj/formats/psf.py
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${PYSITELIB}/mdtraj/formats/psf.pyc
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${PYSITELIB}/mdtraj/formats/psf.pyo
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${PYSITELIB}/mdtraj/formats/registry.py
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${PYSITELIB}/mdtraj/formats/registry.pyc
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${PYSITELIB}/mdtraj/formats/registry.pyo
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${PYSITELIB}/mdtraj/formats/tng.so
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${PYSITELIB}/mdtraj/formats/trr.so
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${PYSITELIB}/mdtraj/formats/xtc.so
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${PYSITELIB}/mdtraj/formats/xyzfile.py
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${PYSITELIB}/mdtraj/formats/xyzfile.pyc
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${PYSITELIB}/mdtraj/formats/xyzfile.pyo
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${PYSITELIB}/mdtraj/geometry/__init__.py
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${PYSITELIB}/mdtraj/geometry/__init__.pyc
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${PYSITELIB}/mdtraj/geometry/__init__.pyo
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${PYSITELIB}/mdtraj/geometry/_geometry.so
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${PYSITELIB}/mdtraj/geometry/alignment.py
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${PYSITELIB}/mdtraj/geometry/alignment.pyc
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${PYSITELIB}/mdtraj/geometry/alignment.pyo
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${PYSITELIB}/mdtraj/geometry/angle.py
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${PYSITELIB}/mdtraj/geometry/angle.pyc
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${PYSITELIB}/mdtraj/geometry/angle.pyo
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${PYSITELIB}/mdtraj/geometry/contact.py
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${PYSITELIB}/mdtraj/geometry/contact.pyc
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${PYSITELIB}/mdtraj/geometry/contact.pyo
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${PYSITELIB}/mdtraj/geometry/dihedral.py
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${PYSITELIB}/mdtraj/geometry/dihedral.pyc
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${PYSITELIB}/mdtraj/geometry/dihedral.pyo
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${PYSITELIB}/mdtraj/geometry/distance.py
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${PYSITELIB}/mdtraj/geometry/distance.pyc
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${PYSITELIB}/mdtraj/geometry/distance.pyo
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${PYSITELIB}/mdtraj/geometry/drid.so
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${PYSITELIB}/mdtraj/geometry/dssp.py
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${PYSITELIB}/mdtraj/geometry/dssp.pyc
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${PYSITELIB}/mdtraj/geometry/dssp.pyo
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${PYSITELIB}/mdtraj/geometry/hbond.py
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${PYSITELIB}/mdtraj/geometry/hbond.pyc
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${PYSITELIB}/mdtraj/geometry/hbond.pyo
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${PYSITELIB}/mdtraj/geometry/internal.py
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${PYSITELIB}/mdtraj/geometry/internal.pyc
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${PYSITELIB}/mdtraj/geometry/internal.pyo
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${PYSITELIB}/mdtraj/geometry/neighborlist.so
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${PYSITELIB}/mdtraj/geometry/neighbors.so
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${PYSITELIB}/mdtraj/geometry/order.py
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${PYSITELIB}/mdtraj/geometry/order.pyc
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${PYSITELIB}/mdtraj/geometry/order.pyo
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${PYSITELIB}/mdtraj/geometry/rdf.py
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${PYSITELIB}/mdtraj/geometry/rdf.pyc
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${PYSITELIB}/mdtraj/geometry/rdf.pyo
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${PYSITELIB}/mdtraj/geometry/rg.py
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${PYSITELIB}/mdtraj/geometry/rg.pyc
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${PYSITELIB}/mdtraj/geometry/rg.pyo
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${PYSITELIB}/mdtraj/geometry/sasa.py
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${PYSITELIB}/mdtraj/geometry/sasa.pyc
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${PYSITELIB}/mdtraj/geometry/sasa.pyo
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${PYSITELIB}/mdtraj/geometry/tests/__init__.py
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${PYSITELIB}/mdtraj/geometry/tests/__init__.pyc
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${PYSITELIB}/mdtraj/geometry/tests/__init__.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_alignment.py
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${PYSITELIB}/mdtraj/geometry/tests/test_alignment.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_alignment.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_angles.py
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${PYSITELIB}/mdtraj/geometry/tests/test_angles.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_angles.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_contact.py
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${PYSITELIB}/mdtraj/geometry/tests/test_contact.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_contact.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_dihedral.py
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${PYSITELIB}/mdtraj/geometry/tests/test_dihedral.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_dihedral.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_distance.py
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${PYSITELIB}/mdtraj/geometry/tests/test_distance.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_distance.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_drid.py
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${PYSITELIB}/mdtraj/geometry/tests/test_drid.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_drid.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_dssp.py
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${PYSITELIB}/mdtraj/geometry/tests/test_dssp.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_dssp.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_geometry.py
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${PYSITELIB}/mdtraj/geometry/tests/test_geometry.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_geometry.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_hbonds.py
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${PYSITELIB}/mdtraj/geometry/tests/test_hbonds.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_hbonds.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_neighborlist.py
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${PYSITELIB}/mdtraj/geometry/tests/test_neighborlist.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_neighborlist.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_neighbors.py
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${PYSITELIB}/mdtraj/geometry/tests/test_neighbors.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_neighbors.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_order.py
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${PYSITELIB}/mdtraj/geometry/tests/test_order.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_order.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_rdf.py
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${PYSITELIB}/mdtraj/geometry/tests/test_rdf.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_rdf.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_sasa.py
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${PYSITELIB}/mdtraj/geometry/tests/test_sasa.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_sasa.pyo
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${PYSITELIB}/mdtraj/geometry/tests/test_thermodynamic_properties.py
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${PYSITELIB}/mdtraj/geometry/tests/test_thermodynamic_properties.pyc
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${PYSITELIB}/mdtraj/geometry/tests/test_thermodynamic_properties.pyo
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${PYSITELIB}/mdtraj/geometry/thermodynamic_properties.py
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${PYSITELIB}/mdtraj/geometry/thermodynamic_properties.pyc
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${PYSITELIB}/mdtraj/geometry/thermodynamic_properties.pyo
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${PYSITELIB}/mdtraj/io.py
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${PYSITELIB}/mdtraj/io.pyc
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${PYSITELIB}/mdtraj/io.pyo
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${PYSITELIB}/mdtraj/nmr/__init__.py
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${PYSITELIB}/mdtraj/nmr/__init__.pyc
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${PYSITELIB}/mdtraj/nmr/__init__.pyo
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${PYSITELIB}/mdtraj/nmr/scalar_couplings.py
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${PYSITELIB}/mdtraj/nmr/scalar_couplings.pyc
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${PYSITELIB}/mdtraj/nmr/scalar_couplings.pyo
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${PYSITELIB}/mdtraj/nmr/shift_wrappers.py
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${PYSITELIB}/mdtraj/nmr/shift_wrappers.pyc
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${PYSITELIB}/mdtraj/nmr/shift_wrappers.pyo
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${PYSITELIB}/mdtraj/reporters/__init__.py
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${PYSITELIB}/mdtraj/reporters/__init__.pyc
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${PYSITELIB}/mdtraj/reporters/__init__.pyo
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${PYSITELIB}/mdtraj/reporters/basereporter.py
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${PYSITELIB}/mdtraj/reporters/basereporter.pyc
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${PYSITELIB}/mdtraj/reporters/basereporter.pyo
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${PYSITELIB}/mdtraj/reporters/dcdreporter.py
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${PYSITELIB}/mdtraj/reporters/dcdreporter.pyc
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${PYSITELIB}/mdtraj/reporters/dcdreporter.pyo
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${PYSITELIB}/mdtraj/reporters/hdf5reporter.py
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${PYSITELIB}/mdtraj/reporters/hdf5reporter.pyc
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${PYSITELIB}/mdtraj/reporters/hdf5reporter.pyo
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${PYSITELIB}/mdtraj/reporters/netcdfreporter.py
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${PYSITELIB}/mdtraj/reporters/netcdfreporter.pyc
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${PYSITELIB}/mdtraj/reporters/netcdfreporter.pyo
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${PYSITELIB}/mdtraj/scripts/__init__.py
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${PYSITELIB}/mdtraj/scripts/__init__.pyc
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${PYSITELIB}/mdtraj/scripts/__init__.pyo
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${PYSITELIB}/mdtraj/scripts/mdconvert.py
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${PYSITELIB}/mdtraj/scripts/mdconvert.pyc
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${PYSITELIB}/mdtraj/scripts/mdconvert.pyo
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${PYSITELIB}/mdtraj/scripts/mdinspect.py
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${PYSITELIB}/mdtraj/scripts/mdinspect.pyc
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${PYSITELIB}/mdtraj/scripts/mdinspect.pyo
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${PYSITELIB}/mdtraj/testing/__init__.py
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${PYSITELIB}/mdtraj/testing/__init__.pyc
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${PYSITELIB}/mdtraj/testing/__init__.pyo
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${PYSITELIB}/mdtraj/testing/docscrape.py
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${PYSITELIB}/mdtraj/testing/docscrape.pyc
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${PYSITELIB}/mdtraj/testing/docscrape.pyo
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${PYSITELIB}/mdtraj/testing/docstrings.py
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${PYSITELIB}/mdtraj/testing/docstrings.pyc
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${PYSITELIB}/mdtraj/testing/docstrings.pyo
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${PYSITELIB}/mdtraj/testing/nosetester.py
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${PYSITELIB}/mdtraj/testing/nosetester.pyc
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${PYSITELIB}/mdtraj/testing/nosetester.pyo
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${PYSITELIB}/mdtraj/testing/reference/1am7_corrected.xtc
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${PYSITELIB}/mdtraj/testing/reference/1am7_protein.pdb
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${PYSITELIB}/mdtraj/testing/reference/1am7_uncorrected.xtc
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${PYSITELIB}/mdtraj/testing/reference/1bpi.pdb
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${PYSITELIB}/mdtraj/testing/reference/1line.pdb
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${PYSITELIB}/mdtraj/testing/reference/1ncw.pdb.gz
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${PYSITELIB}/mdtraj/testing/reference/1vii.pdb
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${PYSITELIB}/mdtraj/testing/reference/1vii.pdb.gz
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${PYSITELIB}/mdtraj/testing/reference/1vii_sustiva_water.pdb
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${PYSITELIB}/mdtraj/testing/reference/2EQQ.pdb
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${PYSITELIB}/mdtraj/testing/reference/2koc.pdb
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${PYSITELIB}/mdtraj/testing/reference/2lines.pdb
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${PYSITELIB}/mdtraj/testing/reference/3lines.pdb
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${PYSITELIB}/mdtraj/testing/reference/3nch.pdb.gz
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${PYSITELIB}/mdtraj/testing/reference/3pqr_memb.psf
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${PYSITELIB}/mdtraj/testing/reference/4OH9.pdb
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${PYSITELIB}/mdtraj/testing/reference/4ZUO.pdb
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${PYSITELIB}/mdtraj/testing/reference/4waters.arc
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${PYSITELIB}/mdtraj/testing/reference/4waters.pdb
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${PYSITELIB}/mdtraj/testing/reference/GG-tip4pew.pdb
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${PYSITELIB}/mdtraj/testing/reference/README.md
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${PYSITELIB}/mdtraj/testing/reference/Rg_traj_ref.dat
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${PYSITELIB}/mdtraj/testing/reference/adp.mol2
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${PYSITELIB}/mdtraj/testing/reference/ala3_chamber.parm7
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${PYSITELIB}/mdtraj/testing/reference/ala_ala_ala.mdcrd
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${PYSITELIB}/mdtraj/testing/reference/ala_ala_ala.pdb
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${PYSITELIB}/mdtraj/testing/reference/ala_ala_ala.psf
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${PYSITELIB}/mdtraj/testing/reference/ala_ala_ala.xpsf
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${PYSITELIB}/mdtraj/testing/reference/ala_dipeptide.dcd
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${PYSITELIB}/mdtraj/testing/reference/ala_dipeptide.pdb
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${PYSITELIB}/mdtraj/testing/reference/ala_dipeptide_trj/clickme.dtr
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${PYSITELIB}/mdtraj/testing/reference/ala_dipeptide_trj/frame000000000
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${PYSITELIB}/mdtraj/testing/reference/ala_dipeptide_trj/frame000000001
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${PYSITELIB}/mdtraj/testing/reference/ala_dipeptide_trj/frame000000002
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${PYSITELIB}/mdtraj/testing/reference/ala_dipeptide_trj/metadata
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${PYSITELIB}/mdtraj/testing/reference/ala_dipeptide_trj/timekeys
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${PYSITELIB}/mdtraj/testing/reference/alanine-dipeptide-explicit.binpos
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${PYSITELIB}/mdtraj/testing/reference/alanine-dipeptide-explicit.dcd
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${PYSITELIB}/mdtraj/testing/reference/alanine-dipeptide-explicit.pdb
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${PYSITELIB}/mdtraj/testing/reference/alanine-dipeptide-explicit.prmtop
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${PYSITELIB}/mdtraj/testing/reference/alanine-dipeptide-implicit.prmtop
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${PYSITELIB}/mdtraj/testing/reference/alanine.binpos
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