2840 lines
139 KiB
Plaintext
2840 lines
139 KiB
Plaintext
@comment $NetBSD: PLIST,v 1.3 2009/10/11 10:44:59 thomasklausner Exp $
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include/ncbi-tools++/algo/align/align_exception.hpp
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include/ncbi-tools++/algo/align/mm_aligner.hpp
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include/ncbi-tools++/algo/align/nw_aligner.hpp
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include/ncbi-tools++/algo/align/nw_band_aligner.hpp
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include/ncbi-tools++/algo/align/nw_formatter.hpp
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include/ncbi-tools++/algo/align/nw_pssm_aligner.hpp
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include/ncbi-tools++/algo/align/nw_spliced_aligner.hpp
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include/ncbi-tools++/algo/align/nw_spliced_aligner16.hpp
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include/ncbi-tools++/algo/align/nw_spliced_aligner32.hpp
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include/ncbi-tools++/algo/align/splign/splign.hpp
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include/ncbi-tools++/algo/align/splign/splign_compartment_finder.hpp
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include/ncbi-tools++/algo/align/splign/splign_formatter.hpp
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include/ncbi-tools++/algo/align/splign/splign_hit.hpp
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include/ncbi-tools++/algo/align/splign/splign_simple.hpp
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include/ncbi-tools++/algo/blast/api/bl2seq.hpp
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include/ncbi-tools++/algo/blast/api/blast_aux.hpp
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include/ncbi-tools++/algo/blast/api/blast_exception.hpp
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include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp
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include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp
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include/ncbi-tools++/algo/blast/api/blast_options.hpp
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include/ncbi-tools++/algo/blast/api/blast_options_handle.hpp
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include/ncbi-tools++/algo/blast/api/blast_prot_options.hpp
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include/ncbi-tools++/algo/blast/api/blast_psi.hpp
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include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp
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include/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp
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include/ncbi-tools++/algo/blast/api/blast_types.hpp
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include/ncbi-tools++/algo/blast/api/blastx_options.hpp
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include/ncbi-tools++/algo/blast/api/db_blast.hpp
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include/ncbi-tools++/algo/blast/api/disc_nucl_options.hpp
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include/ncbi-tools++/algo/blast/api/hspstream_queue.hpp
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include/ncbi-tools++/algo/blast/api/psi_pssm_input.hpp
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include/ncbi-tools++/algo/blast/api/psiblast_options.hpp
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include/ncbi-tools++/algo/blast/api/pssm_input.hpp
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include/ncbi-tools++/algo/blast/api/remote_blast.hpp
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include/ncbi-tools++/algo/blast/api/repeats_filter.hpp
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include/ncbi-tools++/algo/blast/api/rpstblastn_options.hpp
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include/ncbi-tools++/algo/blast/api/seqinfosrc_seqdb.hpp
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include/ncbi-tools++/algo/blast/api/seqinfosrc_seqvec.hpp
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include/ncbi-tools++/algo/blast/api/seqsrc_multiseq.hpp
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include/ncbi-tools++/algo/blast/api/seqsrc_seqdb.hpp
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include/ncbi-tools++/algo/blast/api/tblastn_options.hpp
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include/ncbi-tools++/algo/blast/api/tblastx_options.hpp
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include/ncbi-tools++/algo/blast/core/aa_ungapped.h
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include/ncbi-tools++/algo/blast/core/blast_def.h
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include/ncbi-tools++/algo/blast/core/blast_diagnostics.h
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include/ncbi-tools++/algo/blast/core/blast_dust.h
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include/ncbi-tools++/algo/blast/core/blast_encoding.h
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include/ncbi-tools++/algo/blast/core/blast_engine.h
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include/ncbi-tools++/algo/blast/core/blast_export.h
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include/ncbi-tools++/algo/blast/core/blast_extend.h
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include/ncbi-tools++/algo/blast/core/blast_filter.h
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include/ncbi-tools++/algo/blast/core/blast_gapalign.h
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include/ncbi-tools++/algo/blast/core/blast_hits.h
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include/ncbi-tools++/algo/blast/core/blast_hspstream.h
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include/ncbi-tools++/algo/blast/core/blast_kappa.h
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include/ncbi-tools++/algo/blast/core/blast_lookup.h
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include/ncbi-tools++/algo/blast/core/blast_message.h
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include/ncbi-tools++/algo/blast/core/blast_options.h
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include/ncbi-tools++/algo/blast/core/blast_psi.h
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include/ncbi-tools++/algo/blast/core/blast_rps.h
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include/ncbi-tools++/algo/blast/core/blast_seg.h
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include/ncbi-tools++/algo/blast/core/blast_seqsrc.h
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include/ncbi-tools++/algo/blast/core/blast_setup.h
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include/ncbi-tools++/algo/blast/core/blast_stat.h
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include/ncbi-tools++/algo/blast/core/blast_toolkit.h
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include/ncbi-tools++/algo/blast/core/blast_traceback.h
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include/ncbi-tools++/algo/blast/core/blast_util.h
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include/ncbi-tools++/algo/blast/core/gapinfo.h
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include/ncbi-tools++/algo/blast/core/greedy_align.h
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include/ncbi-tools++/algo/blast/core/hspstream_collector.h
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include/ncbi-tools++/algo/blast/core/link_hsps.h
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include/ncbi-tools++/algo/blast/core/lookup_util.h
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include/ncbi-tools++/algo/blast/core/lookup_wrap.h
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include/ncbi-tools++/algo/blast/core/mb_lookup.h
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include/ncbi-tools++/algo/blast/core/ncbi_math.h
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include/ncbi-tools++/algo/blast/core/ncbi_std.h
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include/ncbi-tools++/algo/blast/core/pattern.h
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include/ncbi-tools++/algo/blast/core/phi_extend.h
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include/ncbi-tools++/algo/blast/core/phi_lookup.h
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include/ncbi-tools++/algo/gnomon/gnomon.hpp
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include/ncbi-tools++/algo/gnomon/gnomon_exception.hpp
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include/ncbi-tools++/algo/phy_tree/bio_tree.hpp
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include/ncbi-tools++/algo/phy_tree/bio_tree_conv.hpp
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include/ncbi-tools++/algo/phy_tree/dist_methods.hpp
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include/ncbi-tools++/algo/phy_tree/phy_node.hpp
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include/ncbi-tools++/algo/phy_tree/phy_tree_serial.hpp
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include/ncbi-tools++/algo/seqqa/blastp_tests.hpp
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include/ncbi-tools++/algo/seqqa/prot_prod_tests.hpp
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include/ncbi-tools++/algo/seqqa/seqtest.hpp
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include/ncbi-tools++/algo/seqqa/single_aln_tests.hpp
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include/ncbi-tools++/algo/seqqa/xcript_tests.hpp
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include/ncbi-tools++/algo/sequence/antigenic.hpp
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include/ncbi-tools++/algo/sequence/coiled_coil.hpp
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include/ncbi-tools++/algo/sequence/cpg.hpp
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include/ncbi-tools++/algo/sequence/find_pattern.hpp
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include/ncbi-tools++/algo/sequence/make_cdr_prods.hpp
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include/ncbi-tools++/algo/sequence/nuc_prop.hpp
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include/ncbi-tools++/algo/sequence/orf.hpp
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include/ncbi-tools++/algo/sequence/polya.hpp
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include/ncbi-tools++/algo/sequence/prot_prop.hpp
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include/ncbi-tools++/algo/sequence/regexp_loc.hpp
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include/ncbi-tools++/algo/sequence/restriction.hpp
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include/ncbi-tools++/algo/sequence/seq_match.hpp
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include/ncbi-tools++/algo/sequence/signal_seq.hpp
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include/ncbi-tools++/algo/structure/struct_dp/struct_dp.h
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include/ncbi-tools++/algo/structure/struct_util/struct_util.hpp
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include/ncbi-tools++/algo/structure/struct_util/su_block_multiple_alignment.hpp
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include/ncbi-tools++/algo/structure/struct_util/su_sequence_set.hpp
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include/ncbi-tools++/algo/tree/tree_algo.hpp
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include/ncbi-tools++/app/project_tree_builder/.cvsignore
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include/ncbi-tools++/app/project_tree_builder/Configuration.hpp
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include/ncbi-tools++/app/project_tree_builder/Configuration_.hpp
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include/ncbi-tools++/app/project_tree_builder/Configurations.hpp
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include/ncbi-tools++/app/project_tree_builder/Configurations_.hpp
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include/ncbi-tools++/app/project_tree_builder/File.hpp
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include/ncbi-tools++/app/project_tree_builder/FileConfiguration.hpp
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include/ncbi-tools++/app/project_tree_builder/FileConfiguration_.hpp
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include/ncbi-tools++/app/project_tree_builder/File_.hpp
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include/ncbi-tools++/app/project_tree_builder/Files.hpp
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include/ncbi-tools++/app/project_tree_builder/Files_.hpp
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include/ncbi-tools++/app/project_tree_builder/Filter.hpp
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include/ncbi-tools++/app/project_tree_builder/Filter_.hpp
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include/ncbi-tools++/app/project_tree_builder/Platform.hpp
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include/ncbi-tools++/app/project_tree_builder/Platform_.hpp
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include/ncbi-tools++/app/project_tree_builder/Platforms.hpp
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include/ncbi-tools++/app/project_tree_builder/Platforms_.hpp
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include/ncbi-tools++/app/project_tree_builder/Tool.hpp
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include/ncbi-tools++/app/project_tree_builder/Tool_.hpp
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include/ncbi-tools++/app/project_tree_builder/VisualStudioProject.hpp
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include/ncbi-tools++/app/project_tree_builder/VisualStudioProject_.hpp
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include/ncbi-tools++/app/project_tree_builder/configurable_file.hpp
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include/ncbi-tools++/app/project_tree_builder/file_contents.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc71_project__.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_configure.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_configure_prj_generator.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_dlls_info.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_dlls_info_utils.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_makefile.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_masterproject_generator.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_prj_defines.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_prj_files_collector.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_prj_generator.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_prj_utils.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_project_context.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_site.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_sln_generator.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_tools_implement.hpp
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include/ncbi-tools++/app/project_tree_builder/msvc_traits.hpp
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include/ncbi-tools++/app/project_tree_builder/proj_builder_app.hpp
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include/ncbi-tools++/app/project_tree_builder/proj_datatool_generated_src.hpp
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include/ncbi-tools++/app/project_tree_builder/proj_item.hpp
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include/ncbi-tools++/app/project_tree_builder/proj_projects.hpp
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include/ncbi-tools++/app/project_tree_builder/proj_src_resolver.hpp
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include/ncbi-tools++/app/project_tree_builder/proj_tree.hpp
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include/ncbi-tools++/app/project_tree_builder/proj_tree_builder.hpp
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include/ncbi-tools++/app/project_tree_builder/proj_utils.hpp
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include/ncbi-tools++/app/project_tree_builder/resolver.hpp
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include/ncbi-tools++/app/project_tree_builder/stl_msvc_usage.hpp
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include/ncbi-tools++/bdb/README
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include/ncbi-tools++/bdb/bdb_blob.hpp
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include/ncbi-tools++/bdb/bdb_blobcache.hpp
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include/ncbi-tools++/bdb/bdb_cursor.hpp
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include/ncbi-tools++/bdb/bdb_env.hpp
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include/ncbi-tools++/bdb/bdb_expt.hpp
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include/ncbi-tools++/bdb/bdb_file.hpp
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include/ncbi-tools++/bdb/bdb_filedump.hpp
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include/ncbi-tools++/bdb/bdb_map.hpp
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include/ncbi-tools++/bdb/bdb_query.hpp
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include/ncbi-tools++/bdb/bdb_query_parser.hpp
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include/ncbi-tools++/bdb/bdb_trans.hpp
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include/ncbi-tools++/bdb/bdb_types.hpp
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include/ncbi-tools++/bdb/bdb_util.hpp
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include/ncbi-tools++/cgi/caf.hpp
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include/ncbi-tools++/cgi/cgi_exception.hpp
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include/ncbi-tools++/cgi/cgiapp.hpp
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include/ncbi-tools++/cgi/cgictx.hpp
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include/ncbi-tools++/cgi/ncbicgi.hpp
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include/ncbi-tools++/cgi/ncbicgir.hpp
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include/ncbi-tools++/cgi/ncbires.hpp
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include/ncbi-tools++/connect/connect_export.h
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include/ncbi-tools++/connect/email_diag_handler.hpp
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include/ncbi-tools++/connect/ncbi_buffer.h
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include/ncbi-tools++/connect/ncbi_conn_exception.hpp
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include/ncbi-tools++/connect/ncbi_conn_reader_writer.hpp
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include/ncbi-tools++/connect/ncbi_conn_stream.hpp
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include/ncbi-tools++/connect/ncbi_connection.h
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include/ncbi-tools++/connect/ncbi_connector.h
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include/ncbi-tools++/connect/ncbi_connutil.h
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include/ncbi-tools++/connect/ncbi_core.h
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include/ncbi-tools++/connect/ncbi_core_cxx.hpp
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include/ncbi-tools++/connect/ncbi_file_connector.h
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include/ncbi-tools++/connect/ncbi_heapmgr.h
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include/ncbi-tools++/connect/ncbi_host_info.h
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include/ncbi-tools++/connect/ncbi_http_connector.h
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include/ncbi-tools++/connect/ncbi_memory_connector.h
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include/ncbi-tools++/connect/ncbi_namedpipe.hpp
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include/ncbi-tools++/connect/ncbi_namedpipe_connector.hpp
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include/ncbi-tools++/connect/ncbi_pipe.hpp
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include/ncbi-tools++/connect/ncbi_pipe_connector.hpp
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include/ncbi-tools++/connect/ncbi_sendmail.h
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include/ncbi-tools++/connect/ncbi_server_info.h
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include/ncbi-tools++/connect/ncbi_service.h
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include/ncbi-tools++/connect/ncbi_service_connector.h
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include/ncbi-tools++/connect/ncbi_socket.h
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include/ncbi-tools++/connect/ncbi_socket.hpp
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include/ncbi-tools++/connect/ncbi_socket_connector.h
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include/ncbi-tools++/connect/ncbi_socket_unix.h
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include/ncbi-tools++/connect/ncbi_socket_unix.hpp
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include/ncbi-tools++/connect/ncbi_types.h
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include/ncbi-tools++/connect/ncbi_util.h
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include/ncbi-tools++/connect/netcache_client.hpp
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include/ncbi-tools++/connect/threaded_server.hpp
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include/ncbi-tools++/corelib/config/ncbiconf_msvc.h
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include/ncbi-tools++/corelib/config/ncbiconf_msvc_site.Debug.h
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include/ncbi-tools++/corelib/config/ncbiconf_msvc_site.DebugDLL.h
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include/ncbi-tools++/corelib/config/ncbiconf_msvc_site.DebugMT.h
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include/ncbi-tools++/corelib/config/ncbiconf_msvc_site.Release.h
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include/ncbi-tools++/corelib/config/ncbiconf_msvc_site.ReleaseDLL.h
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include/ncbi-tools++/corelib/config/ncbiconf_msvc_site.ReleaseMT.h
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include/ncbi-tools++/corelib/config/ncbiconf_msvc_site.h
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include/ncbi-tools++/corelib/config/ncbiconf_mwerks.h
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include/ncbi-tools++/corelib/config/ncbiconf_xcode.h
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include/ncbi-tools++/corelib/ddumpable.hpp
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include/ncbi-tools++/corelib/guard.hpp
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include/ncbi-tools++/corelib/metareg.hpp
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include/ncbi-tools++/corelib/mswin_export.h
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include/ncbi-tools++/corelib/ncbi_bswap.hpp
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include/ncbi-tools++/corelib/ncbi_config.hpp
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include/ncbi-tools++/corelib/ncbi_limits.h
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include/ncbi-tools++/corelib/ncbi_limits.hpp
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include/ncbi-tools++/corelib/ncbi_os_mac.hpp
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include/ncbi-tools++/corelib/ncbi_os_mswin.hpp
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include/ncbi-tools++/corelib/ncbi_os_unix.hpp
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include/ncbi-tools++/corelib/ncbi_process.hpp
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include/ncbi-tools++/corelib/ncbi_safe_static.hpp
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include/ncbi-tools++/corelib/ncbi_system.hpp
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include/ncbi-tools++/corelib/ncbi_tree.hpp
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include/ncbi-tools++/corelib/ncbiapp.hpp
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include/ncbi-tools++/corelib/ncbiargs.hpp
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include/ncbi-tools++/corelib/ncbiatomic.hpp
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include/ncbi-tools++/corelib/ncbicfg.h
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include/ncbi-tools++/corelib/ncbicntr.hpp
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include/ncbi-tools++/corelib/ncbidbg.hpp
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include/ncbi-tools++/corelib/ncbidiag.hpp
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include/ncbi-tools++/corelib/ncbidiag.inl
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include/ncbi-tools++/corelib/ncbidll.hpp
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include/ncbi-tools++/corelib/ncbienv.hpp
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include/ncbi-tools++/corelib/ncbiexec.hpp
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include/ncbi-tools++/corelib/ncbiexpt.hpp
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include/ncbi-tools++/corelib/ncbifile.hpp
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include/ncbi-tools++/corelib/ncbifloat.h
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include/ncbi-tools++/corelib/ncbimisc.hpp
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include/ncbi-tools++/corelib/ncbimtx.hpp
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include/ncbi-tools++/corelib/ncbimtx.inl
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include/ncbi-tools++/corelib/ncbiobj.hpp
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include/ncbi-tools++/corelib/ncbiobj.inl
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include/ncbi-tools++/corelib/ncbireg.hpp
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include/ncbi-tools++/corelib/ncbistd.hpp
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include/ncbi-tools++/corelib/ncbistl.hpp
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include/ncbi-tools++/corelib/ncbistr.hpp
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include/ncbi-tools++/corelib/ncbistre.hpp
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include/ncbi-tools++/corelib/ncbithr.hpp
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include/ncbi-tools++/corelib/ncbithr_conf.hpp
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include/ncbi-tools++/corelib/ncbitime.hpp
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include/ncbi-tools++/corelib/ncbitype.h
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include/ncbi-tools++/corelib/ncbiutil.hpp
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include/ncbi-tools++/corelib/plugin_manager.hpp
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include/ncbi-tools++/corelib/plugin_manager_impl.hpp
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include/ncbi-tools++/corelib/test_mt.hpp
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include/ncbi-tools++/corelib/version.hpp
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include/ncbi-tools++/ctools/asn/asnio.hpp
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include/ncbi-tools++/ctools/asn/asnwrite.hpp
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include/ncbi-tools++/ctools/asn/asnwrite.inl
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include/ncbi-tools++/ctools/asn_connection.h
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include/ncbi-tools++/ctools/asn_converter.hpp
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include/ncbi-tools++/ctools/ctools.h
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include/ncbi-tools++/dbapi/cache/dbapi_blob_cache.hpp
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include/ncbi-tools++/dbapi/dbapi.hpp
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include/ncbi-tools++/dbapi/driver/ctlib/interfaces.hpp
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include/ncbi-tools++/dbapi/driver/dblib/interfaces.hpp
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include/ncbi-tools++/dbapi/driver/dblib/interfaces_p.hpp
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include/ncbi-tools++/dbapi/driver/driver_mgr.hpp
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include/ncbi-tools++/dbapi/driver/drivers.hpp
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include/ncbi-tools++/dbapi/driver/exception.hpp
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include/ncbi-tools++/dbapi/driver/ftds/interfaces.hpp
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include/ncbi-tools++/dbapi/driver/ftds/ncbi_ftds_rename_sybdb.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/bkpublic.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/common.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/cspublic.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/cstypes.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/ctlib.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/ctpublic.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/dblib.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/freebcp.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/sqldb.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/sqlfront.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/sybdb.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/syberror.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/sybfront.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/tds.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/tds_config.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/tdsconvert.h
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include/ncbi-tools++/dbapi/driver/ftds8/freetds/tdsiconv.h
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