69 lines
1.8 KiB
Makefile
69 lines
1.8 KiB
Makefile
# $NetBSD$
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###########################################################
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# Generated by fbsd2pkg #
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###########################################################
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###########################################################
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# Unconverted and partially converted FreeBSD port syntax:
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DISTNAME= blasr-${PORTVERSION}
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CATEGORIES= biology
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MASTER_SITES= http://acadix.biz/Ports/distfiles/
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EXTRACT_SUFX= .tar.xz
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MAINTAINER= bacon@NetBSD.org
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COMMENT= PacBio(R) long read aligner
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# Double-check this
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LICENSE= modified-bsd
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# Just assuming C and C++: Adjust this!
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USE_LANGUAGES= c c++
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USE_TOOLS+= gmake
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SUBST_CLASSES+= bash
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SUBST_STAGE.bash= post-patch
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SUBST_FILES.bash= ${WRKSRC}/makefile
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SUBST_SED.bash= -e 's|/bin/bash|${PREFIX}/bin/bash|g'
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SUBST_SED.bash+= -e 's|-ldl||g'
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SUBST_CLASSES+= libs
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SUBST_STAGE.libs= post-configure
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SUBST_FILES.libs= ${WRKSRC}/defines.mk
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SUBST_SED.libs= -e 's|-ldl||g'
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SUBST_SED.libs+= -e 's|-static||g'
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CXXFLAGS+= -I${PREFIX}/include/blasr_libcpp \
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-I${PREFIX}/include/blasr_libcpp/hdf \
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-I${PREFIX}/include/blasr_libcpp/pbdata \
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-I${PREFIX}/include/blasr_libcpp/alignment \
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-I${PREFIX}/include
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MAKE_FILE= makefile
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PORTVERSION= 2015.08.17
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AUTO_MKDIRS= yes
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do-configure:
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cd ${WRKSRC} && ./configure.py --no-pbbam \
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NOPBBAM=1 HDF5_INCLUDE=${PREFIX}/include \
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HDF5_LIB=${PREFIX}/lib
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do-install:
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${INSTALL_PROGRAM} \
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${WRKSRC}/blasr \
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${WRKSRC}/utils/loadPulses \
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${WRKSRC}/utils/pls2fasta \
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${WRKSRC}/utils/samFilter \
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${WRKSRC}/utils/samtoh5 \
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${WRKSRC}/utils/samtom4 \
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${WRKSRC}/utils/sawriter \
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${WRKSRC}/utils/sdpMatcher \
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${WRKSRC}/utils/toAfg \
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${DESTDIR}${PREFIX}/bin
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.include "../../devel/boost-libs/buildlink3.mk"
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.include "../../devel/hdf5-c++/buildlink3.mk"
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.include "../../wip/blasr_libcpp/buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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