ddocent: Clean up, change wip deps to committed categories
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@ -20,23 +20,23 @@ LICENSE= mit
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# New ddocent works with 2.23.0 or >= 2.26.0
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# New ddocent works with 2.23.0 or >= 2.26.0
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# Do we really need trimadap? It used to be part of seqtk.
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# Do we really need trimadap? It used to be part of seqtk.
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# ddocent test data do not unpack with FreeBSD 11.1 /usr/bin/unzip
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# ddocent test data do not unpack with FreeBSD 11.1 /usr/bin/unzip
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DEPENDS= mawk>=0:../../lang/mawk \
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DEPENDS= mawk>=0:../../lang/mawk
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gawk>=0:../../lang/gawk \
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DEPENDS+= gawk>=0:../../lang/gawk
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coreutils>=0:../../sysutils/coreutils \
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DEPENDS+= coreutils>=0:../../sysutils/coreutils
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gnuplot>=0:../../graphics/gnuplot \
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DEPENDS+= gnuplot>=0:../../graphics/gnuplot
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parallel>=0:../../parallel/parallel \
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DEPENDS+= parallel>=0:../../parallel/parallel
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bwa>=0.7.13:../../biology/bwa \
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DEPENDS+= bwa>=0.7.13:../../biology/bwa
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cdhit>=0:../../biology/cdhit \
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DEPENDS+= cdhit>=0:../../biology/cdhit
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samtools>=1.3:../../biology/samtools \
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DEPENDS+= samtools>=1.3:../../biology/samtools
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vcftools>=0.1.15:../../wip/vcftools \
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DEPENDS+= vcftools>=0.1.15:../../wip/vcftools
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Trimmomatic>=0:../../biology/trimmomatic \
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DEPENDS+= Trimmomatic>=0:../../biology/trimmomatic
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stacks>=0:../../biology/stacks \
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DEPENDS+= stacks>=0:../../biology/stacks
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rainbow>=0:../../wip/rainbow \
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DEPENDS+= rainbow>=0:../../wip/rainbow
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trimadap>=0:../../wip/trimadap \
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DEPENDS+= trimadap>=0:../../wip/trimadap
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seqtk>=0:../../wip/seqtk \
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DEPENDS+= seqtk>=0:../../wip/seqtk
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bedtools2>=2.26.0:../../wip/bedtools2 \
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DEPENDS+= bedtools2>=2.26.0:../../wip/bedtools2
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pear-merger>=0:../../wip/pear-merger \
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DEPENDS+= pear-merger>=0:../../wip/pear-merger
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freebayes>=0:../../wip/freebayes
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DEPENDS+= freebayes>=0:../../wip/freebayes
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## These follow patch-dDocent, so don't apply them within the source tree,
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## These follow patch-dDocent, so don't apply them within the source tree,
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## or they'll get picked up by patch generators and hard-code PREFIX
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## or they'll get picked up by patch generators and hard-code PREFIX
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