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ddocent: Clean up, change wip deps to committed categories

This commit is contained in:
Jason Bacon 2019-05-04 11:33:23 -05:00
parent 8384e48368
commit faa64e7463
1 changed files with 17 additions and 17 deletions
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34
ddocent/Makefile
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@ -20,23 +20,23 @@ LICENSE= mit
# New ddocent works with 2.23.0 or >= 2.26.0 # New ddocent works with 2.23.0 or >= 2.26.0
# Do we really need trimadap? It used to be part of seqtk. # Do we really need trimadap? It used to be part of seqtk.
# ddocent test data do not unpack with FreeBSD 11.1 /usr/bin/unzip # ddocent test data do not unpack with FreeBSD 11.1 /usr/bin/unzip
DEPENDS= mawk>=0:../../lang/mawk \ DEPENDS= mawk>=0:../../lang/mawk
gawk>=0:../../lang/gawk \ DEPENDS+= gawk>=0:../../lang/gawk
coreutils>=0:../../sysutils/coreutils \ DEPENDS+= coreutils>=0:../../sysutils/coreutils
gnuplot>=0:../../graphics/gnuplot \ DEPENDS+= gnuplot>=0:../../graphics/gnuplot
parallel>=0:../../parallel/parallel \ DEPENDS+= parallel>=0:../../parallel/parallel
bwa>=0.7.13:../../biology/bwa \ DEPENDS+= bwa>=0.7.13:../../biology/bwa
cdhit>=0:../../biology/cdhit \ DEPENDS+= cdhit>=0:../../biology/cdhit
samtools>=1.3:../../biology/samtools \ DEPENDS+= samtools>=1.3:../../biology/samtools
vcftools>=0.1.15:../../wip/vcftools \ DEPENDS+= vcftools>=0.1.15:../../wip/vcftools
Trimmomatic>=0:../../biology/trimmomatic \ DEPENDS+= Trimmomatic>=0:../../biology/trimmomatic
stacks>=0:../../biology/stacks \ DEPENDS+= stacks>=0:../../biology/stacks
rainbow>=0:../../wip/rainbow \ DEPENDS+= rainbow>=0:../../wip/rainbow
trimadap>=0:../../wip/trimadap \ DEPENDS+= trimadap>=0:../../wip/trimadap
seqtk>=0:../../wip/seqtk \ DEPENDS+= seqtk>=0:../../wip/seqtk
bedtools2>=2.26.0:../../wip/bedtools2 \ DEPENDS+= bedtools2>=2.26.0:../../wip/bedtools2
pear-merger>=0:../../wip/pear-merger \ DEPENDS+= pear-merger>=0:../../wip/pear-merger
freebayes>=0:../../wip/freebayes DEPENDS+= freebayes>=0:../../wip/freebayes
## These follow patch-dDocent, so don't apply them within the source tree, ## These follow patch-dDocent, so don't apply them within the source tree,
## or they'll get picked up by patch generators and hard-code PREFIX ## or they'll get picked up by patch generators and hard-code PREFIX